RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 ZNF492Q9P255 531 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.09□□□□□ -1.27
VCAN-208ENST00000512590 IGKV2-29A2NJV5 120 aaPredicted RBP7.09□□□□□ -1.27
VCAN-208ENST00000512590 IGHV2-5P01817 119 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 SPAG11BQ08648 103 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 MRPL52Q86TS9 123 aaKnown RBP7.09□□□□□ -1.27
VCAN-208ENST00000512590 AGMATQ9BSE5 352 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 SHANK2-AS3Q9BTD1 123 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 GTSF1LQ9H1H1 148 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 X6R8D5 127 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 DOCK1Q14185 1865 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 EVPLQ92817 2033 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 MYO18AQ92614 2054 aaKnown RBP7.09□□□□□ -1.27
VCAN-208ENST00000512590 IGLV3-12A0A075B6K2 115 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 HIGD2BQ4VC39 106 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 IGHV4-61A0A0C4DH41 118 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 LINC01548A6NM66 108 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 ABCA7Q8IZY2 2146 aa7.09□□□□□ -1.27
VCAN-208ENST00000512590 A0A1B0GV90 55 aa7.09□□□□□ -1.28
VCAN-208ENST00000512590 DNAJC9-AS1A6NH13 148 aa7.09□□□□□ -1.28
VCAN-208ENST00000512590 IGF1P05019 195 aa7.09□□□□□ -1.28
VCAN-208ENST00000512590 CFPP27918 469 aa7.09□□□□□ -1.28
VCAN-208ENST00000512590 BCL6BQ8N143 479 aaPredicted RBP7.09□□□□□ -1.28
VCAN-208ENST00000512590 RNF152Q8N8N0 203 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 CACNA1SQ13698 1873 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 SCN7AQ01118 1682 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 ADAMTSL5Q6ZMM2 481 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 C4orf3Q8WVX3 66 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 MRPS18AQ9NVS2 196 aaKnown RBP7.08□□□□□ -1.28
VCAN-208ENST00000512590 PLCH1Q4KWH8 1693 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 CXCL2P19875 107 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 CXCL3P19876 107 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 DIRC1Q969H9 104 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 IGKV1D-8A0A087WSZ0 117 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 CENPVL3A0A0U1RRI6 287 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 CD55P08174 381 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 IGHV4-38-2P0DP08 117 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 IGFL3Q6UXB1 125 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 WFDC11Q8NEX6 87 aa7.08□□□□□ -1.28
VCAN-208ENST00000512590 TRIP11Q15643 1979 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 DOCK2Q92608 1830 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 TEX36Q5VZQ5 186 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 AJUBAQ96IF1 538 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 LRP5O75197 1615 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 TJP1Q07157 1748 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 EP300Q09472 2414 aaPredicted RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 FXYD1O00168 92 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 C2orf66Q6UXQ4 117 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 DEFB125Q8N687 156 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 LAMTOR2Q9Y2Q5 125 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 IGKV1D-43A0A0B4J1Z2 117 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 PDE6HQ13956 83 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 MDC1Q14676 2089 aaKnown RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 GAGE12HA6NDE8 117 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 LY6G6DO95868 133 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 DAZ2Q13117 558 aaKnown RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 DAZ4Q86SG3 579 aaKnown RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 PUSL1Q8N0Z8 303 aaKnown RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 DAZ3Q9NR90 486 aaKnown RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 SNRNP200O75643 2136 aaKnown RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 RGPD3A6NKT7 1758 aaPredicted RBP7.07□□□□□ -1.28
VCAN-208ENST00000512590 MAST2Q6P0Q8 1798 aa7.07□□□□□ -1.28
VCAN-208ENST00000512590 RPRMLQ8N4K4 120 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 CTHRC1Q96CG8 243 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 OPRPNQ99935 248 aaPredicted RBP7.06□□□□□ -1.28
VCAN-208ENST00000512590 Q6ZVQ6 151 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 FAM19A5Q7Z5A7 132 aaPredicted RBP7.06□□□□□ -1.28
VCAN-208ENST00000512590 A0A0G2JRQ6 117 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 WT1P19544 449 aaPredicted RBP7.06□□□□□ -1.28
VCAN-208ENST00000512590 MYO7AQ13402 2215 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 IGKV1-9A0A0C4DH69 117 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 YPEL3P61236 119 aaPredicted RBP7.06□□□□□ -1.28
VCAN-208ENST00000512590 LINC01620Q4KN68 170 aa7.06□□□□□ -1.28
VCAN-208ENST00000512590 DDX60Q8IY21 1712 aaKnown RBP7.06□□□□□ -1.28
VCAN-208ENST00000512590 K7EM74 188 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 SHROOM3Q8TF72 1996 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 ZNFX1Q9P2E3 1918 aaKnown RBP7.05□□□□□ -1.28
VCAN-208ENST00000512590 TRBV10-2A0A0K0K1G8 114 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 C4orf51C9J302 202 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 IGLV5-52A0A0A0MRZ9 124 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 NDUFS7O75251 213 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 HLA-DMBP28068 263 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 C10orf105Q8TEF2 133 aa7.05□□□□□ -1.28
VCAN-208ENST00000512590 CXCL5P42830 114 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 SPATA12Q7Z6I5 190 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 Q9H8V8 135 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 IGKV1D-17A0A075B6S4 117 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 MAP1BP46821 2468 aaKnown RBP7.04□□□□□ -1.28
VCAN-208ENST00000512590 SYS1-DBNDD2H3BUS1 97 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 SRP19P09132 144 aaKnown RBP7.04□□□□□ -1.28
VCAN-208ENST00000512590 C3orf22Q8N5N4 141 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 TREML4Q6UXN2 200 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 LRRC75A-AS1Q8N1F1 130 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 MYH7BA7E2Y1 1941 aa7.04□□□□□ -1.28
VCAN-208ENST00000512590 SVILO95425 2214 aa7.03□□□□□ -1.28
VCAN-208ENST00000512590 IGLV3-9A0A075B6K5 115 aa7.03□□□□□ -1.28
VCAN-208ENST00000512590 TRAV26-1A0A087WT03 109 aa7.03□□□□□ -1.28
VCAN-208ENST00000512590 CARD19Q96LW7 228 aa7.03□□□□□ -1.28
VCAN-208ENST00000512590 NHSL1Q5SYE7 1610 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms