RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 FAM106CPP0CH98 169 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 DTX2Q86UW9 622 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SRSF8Q9BRL6 282 aaKnown RBP12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 PRSS29PA6NIE9 313 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 LOXL1Q08397 574 aaPredicted RBP12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 FAM159AQ6UWV7 190 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 C20orf78Q9BR46 151 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 PCNX2A6NKB5 2137 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 LY6G6EA0A0G2JKS1 128 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 GATA4P43694 442 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 U3KQA8 63 aa12.14□□□□□ -0.47
HLA-DQB1-209ENST00000487676 NCOR1O75376 2440 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TRAV21A0A0B4J279 112 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 ODF1Q14990 250 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SLC25A20O43772 301 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 PRB3Q04118 309 aaPredicted RBP12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SVIPQ8NHG7 77 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 EEF1AKMT3Q96AZ1 226 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TPSG1Q9NRR2 321 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 CPAMD8Q8IZJ3 1885 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 POLEQ07864 2286 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 C22orf46C9J442 243 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 INS-IGF2F8WCM5 200 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 ZNF56Q15929 161 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 IGFL4Q6B9Z1 124 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 DPH3P1Q9H4G8 78 aa12.13□□□□□ -0.47
HLA-DQB1-209ENST00000487676 EFNA4P52798 201 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 FAM106AQ4KMX7 169 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 C17orf77Q96MU5 243 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 PRO1854Q9UHT4 67 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TIMM23O14925 209 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 ID1P41134 155 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 KLRB1Q12918 225 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 C2orf66Q6UXQ4 117 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 COPS9Q8WXC6 57 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 ZNF493Q6ZR52 646 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TMEM95Q3KNT9 176 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 C1orf122Q6ZSJ8 110 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SMIM20Q8N5G0 67 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 URB1-AS1Q96HZ7 61 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TM2D2Q9BX73 214 aa12.12□□□□□ -0.47
HLA-DQB1-209ENST00000487676 CACNA1HO95180 2353 aa12.11□□□□□ -0.47
HLA-DQB1-209ENST00000487676 LINC00311Q8N616 119 aa12.11□□□□□ -0.47
HLA-DQB1-209ENST00000487676 EGR2P11161 476 aaPredicted RBP12.11□□□□□ -0.47
HLA-DQB1-209ENST00000487676 CR1LQ2VPA4 569 aa12.11□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TRBV6-1A0A0K0K1D8 114 aa12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SIGLEC15Q6ZMC9 328 aa12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SUMO2P61956 95 aaKnown RBP12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SPATA25Q9BR10 227 aa12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 HCFC1P51610 2035 aa12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 SMIM2Q9BVW6 85 aa12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TMEM178BH3BS89 294 aa12.1□□□□□ -0.47
HLA-DQB1-209ENST00000487676 RNF183Q96D59 192 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 H3BMM0 161 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 IGLV1-44P01699 117 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 ERCC8Q13216 396 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 ANXA2RQ3ZCQ2 193 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 UBE2WQ96B02 151 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 PLEKHB2Q96CS7 222 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 HLA-DMBP28068 263 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 C1orf159Q96HA4 380 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 MRPL36Q9P0J6 103 aaKnown RBP12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 KIAA1549Q9HCM3 1950 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 Q6ZUT4 128 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 TMEM101Q96IK0 257 aa12.09□□□□□ -0.47
HLA-DQB1-209ENST00000487676 RNF182Q8N6D2 247 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 ZNF491Q8N8L2 437 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 FCN3O75636 299 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 C14orf178Q8N769 122 aaPredicted RBP12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 IGKV1D-37A0A075B6S9 117 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 M0R2P5 195 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 FGF6P10767 208 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 CNTFRP26992 372 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 CLEC19AQ6UXS0 136 aa12.08□□□□□ -0.48
HLA-DQB1-209ENST00000487676 VWC2LB2RUY7 222 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 BSPH1Q075Z2 132 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 TMEM105Q8N8V8 129 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 ABHD17AQ96GS6 310 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 CEACAM4O75871 244 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 RNASE4P34096 147 aaKnown RBP12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 DIAPH2-AS1Q14236 149 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 TRAV26-2A0A0B4J265 109 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 BUB1B-PAK6H3BSN5 160 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 IGHG3P01860 377 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 GATA1P15976 413 aaPredicted RBP12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 YAE1D1Q9NRH1 226 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 B9A039 149 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 COL8A2P25067 703 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 NTN5Q8WTR8 489 aaPredicted RBP12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 GLMPQ8WWB7 406 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 MED13Q9UHV7 2174 aa12.07□□□□□ -0.48
HLA-DQB1-209ENST00000487676 NBASA2RRP1 2371 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 VCYO14598 125 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 MT-ATP8P03928 68 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 MEIG1Q5JSS6 88 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 C15orf53Q8NAA6 179 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 C2orf16Q68DN1 1984 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 MYCNOSP40205 109 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 MSRB1Q9NZV6 116 aa12.06□□□□□ -0.48
HLA-DQB1-209ENST00000487676 ZGRF1Q86YA3 2104 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms