RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 DEFB135Q30KP9 77 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 EXOC3-AS1Q8N2X6 119 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 Q8NAQ8 132 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 BLNKQ8WV28 456 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 HIST1H2BAQ96A08 127 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 MAP1LC3BQ9GZQ8 125 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 AGPAT4-IT1Q9H0P7 198 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 ZNF492Q9P255 531 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 TP53TG3Q9ULZ0 132 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 KLF12Q9Y4X4 402 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 X6R8D5 127 aa4.83□□□□□ -1.64
PTPRE-209ENST00000487428 PGPA6NDG6 321 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 FAM74A7A6NL05 159 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 GGTLC3B5MD39 225 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 PRAC2D3DTV9 90 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 INSP01308 110 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 TCRAP04437 139 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 H2AFB1P0C5Y9 115 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 CT45A10P0DMU9 189 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 ZNF138P52744 262 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 HIST1H1AQ02539 215 aaPredicted RBP4.82□□□□□ -1.64
PTPRE-209ENST00000487428 TMEM78Q5T7P6 136 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 Q6AWC8 147 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 IGFL4Q6B9Z1 124 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 ZNF493Q6ZR52 646 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 ZFAND2AQ8N6M9 145 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 TMEM75Q8N9X5 138 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 OR4B1Q8NGF8 309 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 OR11H2Q8NH07 326 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 CMTM2Q8TAZ6 248 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 ASCL2Q99929 193 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 RARRES2Q99969 163 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 ATG101Q9BSB4 218 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 MANBALQ9NQG1 85 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 EPDR1Q9UM22 224 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 GOLT1BQ9Y3E0 138 aa4.82□□□□□ -1.64
PTPRE-209ENST00000487428 F6UZH7 168 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 C3orf84H3BNL1 204 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 H3BTX0 84 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 H7BYZ3 331 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 K7EQM0 130 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 ZNF324O75467 553 aaPredicted RBP4.81□□□□□ -1.64
PTPRE-209ENST00000487428 S100A9P06702 114 aaKnown RBP4.81□□□□□ -1.64
PTPRE-209ENST00000487428 TAS2R60P59551 318 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 DEFB1P60022 68 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 SUMO1P63165 101 aaKnown RBP4.81□□□□□ -1.64
PTPRE-209ENST00000487428 BLOC1S1P78537 153 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 TDRG1Q3Y452 100 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 C1orf158Q8N1D5 194 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 CYB561D1Q8N8Q1 229 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 FAM213BQ8TBF2 198 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 SFT2D1Q8WV19 159 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 PYGO2Q9BRQ0 406 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 SLC35B3Q9H1N7 401 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 XCL2Q9UBD3 114 aa4.81□□□□□ -1.64
PTPRE-209ENST00000487428 C7orf71A4D174 169 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 IGLV2-11P01706 119 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 SPINK13Q1W4C9 94 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 ANXA2RQ3ZCQ2 193 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 SAPCD1Q5SSQ6 148 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 IBA57Q5T440 356 aaKnown RBP4.8□□□□□ -1.64
PTPRE-209ENST00000487428 C11orf52Q96A22 123 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 SMIM12Q96EX1 92 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 C18orf15Q96N68 181 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 VGLL1Q99990 258 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 ZFP30Q9Y2G7 519 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 YTHDF2Q9Y5A9 579 aaKnown RBP4.8□□□□□ -1.64
PTPRE-209ENST00000487428 NACAE9PAV3 2078 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 CSMD3Q7Z407 3707 aa4.8□□□□□ -1.64
PTPRE-209ENST00000487428 IGKV2-40A0A087WW87 121 aaPredicted RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 M0R2Z0 102 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 HMGB3O15347 200 aaKnown RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 IGKV2D-40P01614 121 aaPredicted RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 SNRPCP09234 159 aaKnown RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 FLI1Q01543 452 aaPredicted RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 TMEM183BQ1AE95 376 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 RRN3P1Q2M238 152 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 GFI1BQ5VTD9 330 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 ZNF680Q8NEM1 530 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 RNASE8Q8TDE3 154 aaKnown RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 C2CD4CQ8TF44 421 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 TMEM263Q8WUH6 116 aaKnown RBP4.79□□□□□ -1.64
PTPRE-209ENST00000487428 C16orf74Q96GX8 76 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 FMC1Q96HJ9 113 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 TMPRSS5Q9H3S3 457 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 RETNQ9HD89 108 aa4.79□□□□□ -1.64
PTPRE-209ENST00000487428 IGHV4-28A0A0C4DH34 117 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 PLAC8L1A1L4L8 177 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 LYRM9A8MSI8 78 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 C11orf94C9JXX5 98 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 PEX7O00628 323 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 PDE6DO43924 150 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 LTAP01374 205 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 IFNA1P01562 189 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 IGKV3-20P01619 116 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 GPX1P07203 203 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 RBMY1A1P0DJD3 496 aaKnown RBP4.78□□□□□ -1.64
PTPRE-209ENST00000487428 RBMY1CP0DJD4 496 aa4.78□□□□□ -1.64
PTPRE-209ENST00000487428 FGF8P55075 233 aaPredicted RBP4.78□□□□□ -1.64
PTPRE-209ENST00000487428 TCTAP57738 103 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms