RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 PCF11O94913 1555 aaKnown RBP-0.16□□□□□ -2.44
VPS50-217ENST00000485140 UBR5O95071 2799 aaPredicted RBP-0.17□□□□□ -2.44
VPS50-217ENST00000485140 BBIP1A8MTZ0 92 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 C5orf58C9J3I9 102 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 IFNA6P05013 189 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 FABP4P15090 132 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 FADDQ13158 208 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 ZCCHC23Q6ZST2 131 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 NUP35Q8NFH5 326 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 OR4B1Q8NGF8 309 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 RTL8AQ9BWD3 113 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 KIAA1107Q9UPP5 1409 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 ASB4Q9Y574 426 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 N4BP2Q86UW6 1770 aaPredicted RBP-0.17□□□□□ -2.44
VPS50-217ENST00000485140 KDM6BO15054 1643 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 DSPPQ9NZW4 1301 aa-0.17□□□□□ -2.44
VPS50-217ENST00000485140 RTL9Q8NET4 1388 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 CACNA1HO95180 2353 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 FRMPD1Q5SYB0 1578 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 CD109Q6YHK3 1445 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 TRACP01848 142 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 RTL8BQ17RB0 113 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 C3orf62Q6ZUJ4 267 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 VMO1Q7Z5L0 202 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 DGCR14Q96DF8 476 aaKnown RBP-0.18□□□□□ -2.44
VPS50-217ENST00000485140 PROK2Q9HC23 129 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 LAMTOR3Q9UHA4 124 aa-0.18□□□□□ -2.44
VPS50-217ENST00000485140 RBBP6Q7Z6E9 1792 aaKnown RBP-0.19□□□□□ -2.44
VPS50-217ENST00000485140 POLQO75417 2590 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 C3orf85A0A1B0GTC6 90 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 ARL5CA6NH57 179 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 H3BQV1 296 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 KPNA4O00629 521 aaPredicted RBP-0.19□□□□□ -2.44
VPS50-217ENST00000485140 NDUFA6P56556 154 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 ZNF56Q15929 161 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 TMEM229BQ8NBD8 167 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 OR13C6PQ8NH95 151 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 LINC00208Q96KT6 92 aa-0.19□□□□□ -2.44
VPS50-217ENST00000485140 CIB3Q96Q77 187 aaPredicted RBP-0.19□□□□□ -2.44
VPS50-217ENST00000485140 MRPL35Q9NZE8 188 aaKnown RBP-0.19□□□□□ -2.44
VPS50-217ENST00000485140 NSD1Q96L73 2696 aaPredicted RBP-0.19□□□□□ -2.44
VPS50-217ENST00000485140 CELSR1Q9NYQ6 3014 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 A0A1W2PPB8 328 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 A0A1W2PRS3 328 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 HIGD1CA8MV81 97 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 KIR3DP1A8MWS1 328 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 FXYD1O00168 92 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 HSD11B1P28845 292 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 CAPZBP47756 277 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 ASB16-AS1Q495Z4 193 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 IZUMO2Q6UXV1 221 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 TCTEX1D1Q8N7M0 179 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 ISOC1Q96CN7 298 aa-0.2□□□□□ -2.44
VPS50-217ENST00000485140 ATG2AQ2TAZ0 1938 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 FLNCQ14315 2725 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 ASXL3Q9C0F0 2248 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 LOC107984156A0A0G2JMH3 177 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 TMEM210A6NLX4 147 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 IFNA1P01562 189 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 DNAJB13P59910 316 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 FXYD3Q14802 87 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 CCSMST1Q4G0I0 132 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 DHRS4L2Q6PKH6 230 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 ARL17AQ8IVW1 177 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 CCL4L1Q8NHW4 92 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 CAMSAP1Q5T5Y3 1602 aa-0.21□□□□□ -2.44
VPS50-217ENST00000485140 JMJD1CQ15652 2540 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 SAA1P0DJI8 122 aaPredicted RBP-0.22□□□□□ -2.44
VPS50-217ENST00000485140 TPT1P13693 172 aaKnown RBP-0.22□□□□□ -2.44
VPS50-217ENST00000485140 CSAG1Q6PB30 78 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 DEFB132Q7Z7B7 95 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 C5orf56Q8N8D9 126 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 MNS1Q8NEH6 495 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 FAM213BQ8TBF2 198 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 BORCS8Q96FH0 119 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 GINS3Q9BRX5 216 aa-0.22□□□□□ -2.44
VPS50-217ENST00000485140 MRPL36Q9P0J6 103 aaKnown RBP-0.22□□□□□ -2.44
VPS50-217ENST00000485140 CTTNBP2Q8WZ74 1663 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 IGF2P01344 180 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 FABP2P12104 132 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 ARF6P62330 175 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 POU6F1Q14863 301 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 OR8J3Q8NGG0 315 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 OR5H6Q8NGV6 325 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 DIRC1Q969H9 104 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 CHMP6Q96FZ7 201 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 C19orf12Q9NSK7 152 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 IL20Q9NYY1 176 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 SS18L2Q9UHA2 77 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 U3KQA8 63 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 MUC12Q9UKN1 5478 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 NEBP20929 6669 aa-0.23□□□□□ -2.45
VPS50-217ENST00000485140 CELSR2Q9HCU4 2923 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 KIAA1549LQ6ZVL6 1849 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 NBDYA0A0U1RRE5 68 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 LOC101927531A0A1B0GV80 90 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 MCRIP1C9JLW8 97 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 TPST1O60507 370 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 S100A6P06703 90 aa-0.24□□□□□ -2.45
VPS50-217ENST00000485140 TCTAP57738 103 aa-0.24□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms