RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 OR2H1Q9GZK4 316 aa3.78□□□□□ -1.8
USP40-213ENST00000483216 GEMIN7Q9H840 131 aaKnown RBP3.78□□□□□ -1.8
USP40-213ENST00000483216 FAM60AQ9NP50 221 aa3.78□□□□□ -1.8
USP40-213ENST00000483216 SPTBP11277 2137 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 KNL1Q8NG31 2342 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 IGLV3-12A0A075B6K2 115 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 IGKV1D-43A0A0B4J1Z2 117 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 PPIAL4CA0A0B4J2A2 164 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 IGKV1D-13A0A0B4J2D9 117 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 TRBV6-1A0A0K0K1D8 114 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 A0A1B0GWB2 263 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 C21orf140B9A014 251 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 LINC01619G3V211 115 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 KLRC4-KLRK1H3BQV0 150 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 H3BUT2 72 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 M0QXV9 152 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 SYNGR1O43759 233 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 ATP5LO75964 103 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 IGKV1D-33P01593 117 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 IGKV1-33P01594 117 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 CRYGCP07315 174 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 PPIAL4GP0DN37 164 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 IGKV1-13P0DP09 117 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 DUSP3P51452 185 aaPredicted RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 FOXA3P55318 350 aaPredicted RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 RPL30P62888 115 aaKnown RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 ERHP84090 104 aaKnown RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 KLRD1Q13241 179 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 LINC01561Q8N1V8 128 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 DRAM1Q8N682 238 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 TEX29Q8N6K0 151 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 TPRX1Q8N7U7 411 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 TMEM105Q8N8V8 129 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 FADS6Q8N9I5 356 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 RLN3Q8WXF3 142 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 COQ2Q96H96 371 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 TMEM126AQ9H061 195 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 RPP21Q9H633 154 aaKnown RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 IDI2-AS1Q9NZ38 188 aa3.77□□□□□ -1.81
USP40-213ENST00000483216 BOKQ9UMX3 212 aaPredicted RBP3.77□□□□□ -1.81
USP40-213ENST00000483216 THADAQ6YHU6 1953 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 TECTAO75443 2155 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 NCBP2LA6PVI3 153 aaKnown RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 HIGD1CA8MV81 97 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 PPIAL4DF5H284 164 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 H3BMG7 143 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 K7EMI3 77 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 MRPL33O75394 65 aaKnown RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 KLF7O75840 302 aaPredicted RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 CA1P00915 261 aaPredicted RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 P04436 131 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 IGF1P05019 195 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 NPPCP23582 126 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 NBL1P41271 181 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 MAGEA5P43359 124 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 GFERP55789 205 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 HSPE1P61604 102 aaKnown RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 PSG4Q00888 419 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 MRPL23Q16540 153 aaKnown RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 ZFAND6Q6FIF0 208 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 PDPNQ86YL7 162 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 LYPD1Q8N2G4 141 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 NUP35Q8NFH5 326 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 OR10D3Q8NH80 312 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 LRRC29Q8WV35 223 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 SRSF12Q8WXF0 261 aaKnown RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 ZNF714Q96N38 554 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 KLHDC3Q9BQ90 382 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 SLC25A39Q9BZJ4 359 aaPredicted RBP3.76□□□□□ -1.81
USP40-213ENST00000483216 WDR54Q9H977 334 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 JPT1Q9UK76 154 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 RFNGQ9Y644 331 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 HEATR5AQ86XA9 2040 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 GTF3C1Q12789 2109 aa3.76□□□□□ -1.81
USP40-213ENST00000483216 WDFY4Q6ZS81 3184 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 SPAG17Q6Q759 2223 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 TRBV20OR9-2A0A075B6H5 130 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 IGKV1-27A0A075B6S5 117 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 LOC102724200A0A096LPH7 203 aaPredicted RBP3.75□□□□□ -1.81
USP40-213ENST00000483216 TRAV8-6A0A0B4J262 113 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 IGHV5-51A0A0C4DH38 117 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 IGKV1-12A0A0C4DH73 117 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 A0A1B0GUT8 65 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 A0A1B0GXF2 115 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 INS-IGF2F8WCM5 200 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 K7EN84 100 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 PEX7O00628 323 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 COX7A2P2O60397 106 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 APOMO95445 188 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 TSPAN13O95857 204 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 IGKV1D-12P01611 117 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 HBDP02042 147 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 OTX2P32243 289 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 CXCL12P48061 93 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 CRYBA4P53673 196 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 APOC4P55056 127 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 UBE2L3P68036 154 aaKnown RBP3.75□□□□□ -1.81
USP40-213ENST00000483216 DEFB133Q30KQ1 61 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 DMRTC1Q5HYR2 192 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms