RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 HSPB11Q9Y547 144 aa10.44□□□□□ -0.74
LIMS3-204ENST00000482065 PKHD1P08F94 4074 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 GAGE12BA1L429 117 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 C7orf71A4D174 169 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 GAGE7O76087 117 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 SLC25A5P05141 298 aaKnown RBP10.43□□□□□ -0.74
LIMS3-204ENST00000482065 NBEAP1P0C6P0 100 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 GAGE12FP0CL80 117 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 GAGE12GP0CL81 117 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 GAGE12IP0CL82 117 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 CD300CQ08708 224 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 LINC00612Q8N6U2 182 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 RNF141Q8WVD5 230 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 PHYHIPLQ96FC7 376 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 FAM19A4Q96LR4 140 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 LINC00477Q96M19 166 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 PYGO2Q9BRQ0 406 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 ATG101Q9BSB4 218 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 MBD2Q9UBB5 411 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 FUT9Q9Y231 359 aa10.43□□□□□ -0.74
LIMS3-204ENST00000482065 HERC2O95714 4834 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 A0A1B0GVY2 172 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 PRSS29PA6NIE9 313 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 SNURFLB1AK76 121 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 KLLNB2CW77 178 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 C17orf112F2Z3M2 114 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 PET100P0DJ07 73 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 RPL12P30050 165 aaKnown RBP10.42□□□□□ -0.74
LIMS3-204ENST00000482065 FFAR4Q5NUL3 377 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 C9orf47Q6ZRZ4 202 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 ZNF503Q96F45 646 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 VGLL1Q99990 258 aa10.42□□□□□ -0.74
LIMS3-204ENST00000482065 OR7C2O60412 319 aa10.41□□□□□ -0.74
LIMS3-204ENST00000482065 ZNF324O75467 553 aaPredicted RBP10.41□□□□□ -0.74
LIMS3-204ENST00000482065 EIF3GO75821 320 aaKnown RBP eCLIP10.41□□□□□ -0.74
LIMS3-204ENST00000482065 RNASE4P34096 147 aaKnown RBP10.41□□□□□ -0.74
LIMS3-204ENST00000482065 OR5I1Q13606 314 aa10.41□□□□□ -0.74
LIMS3-204ENST00000482065 PRR9Q5T870 116 aa10.41□□□□□ -0.74
LIMS3-204ENST00000482065 WFDC1Q9HC57 220 aa10.41□□□□□ -0.74
LIMS3-204ENST00000482065 DYNC1H1Q14204 4646 aaKnown RBP10.41□□□□□ -0.74
LIMS3-204ENST00000482065 PKD1P98161 4303 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 IFNA5P01569 189 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 CRISP2P16562 243 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 HOXA5P20719 270 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 TMEM78Q5T7P6 136 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 Q6ZQT7 251 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 Q6ZTI0 123 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 ZFAND2AQ8N6M9 145 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 Q8TAT8 98 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 SCGB1C1Q8TD33 95 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 BATF3Q9NR55 127 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 GSN-AS1Q9NRJ2 163 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 ALG5Q9Y673 324 aa10.4□□□□□ -0.74
LIMS3-204ENST00000482065 DNAH11Q96DT5 4516 aa10.4□□□□□ -0.75
LIMS3-204ENST00000482065 TRAV26-1A0A087WT03 109 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 A0A0J9YY99 117 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 GPX1P07203 203 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 FAM3BP58499 235 aaPredicted RBP10.39□□□□□ -0.75
LIMS3-204ENST00000482065 RANP62826 216 aaKnown RBP10.39□□□□□ -0.75
LIMS3-204ENST00000482065 UBE2L3P68036 154 aaKnown RBP10.39□□□□□ -0.75
LIMS3-204ENST00000482065 DAZ2Q13117 558 aaKnown RBP10.39□□□□□ -0.75
LIMS3-204ENST00000482065 C11orf72Q8NBR9 251 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 TMPRSS5Q9H3S3 457 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 ZNF492Q9P255 531 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 LINC00588Q9Y4M8 146 aa10.39□□□□□ -0.75
LIMS3-204ENST00000482065 EIF4E3Q8N5X7 224 aaKnown RBP10.38□□□□□ -0.75
LIMS3-204ENST00000482065 ZNF680Q8NEM1 530 aa10.38□□□□□ -0.75
LIMS3-204ENST00000482065 ZNRF2Q8NHG8 242 aa10.38□□□□□ -0.75
LIMS3-204ENST00000482065 GNPNAT1Q96EK6 184 aaPredicted RBP10.38□□□□□ -0.75
LIMS3-204ENST00000482065 LINC00467Q9BRT7 94 aa10.38□□□□□ -0.75
LIMS3-204ENST00000482065 Q9H3A6 140 aa10.38□□□□□ -0.75
LIMS3-204ENST00000482065 KIAA1109Q2LD37 5005 aa10.38□□□□□ -0.75
LIMS3-204ENST00000482065 M6PRP20645 277 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 ZNF138P52744 262 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 CCL18P55774 89 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 ANXA2RQ3ZCQ2 193 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 KHDC3LQ587J8 217 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 C1orf134Q5TEV5 83 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 TP53TG3Q9ULZ0 132 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 KLF12Q9Y4X4 402 aa10.37□□□□□ -0.75
LIMS3-204ENST00000482065 TRGV1A0A0A0MS02 117 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 RGS13O14921 159 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 NMBP08949 121 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 CSN1S1P47710 185 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 TAS2R45P59539 299 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 SSX7Q7RTT5 188 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 RXFP4Q8TDU9 374 aa10.36□□□□□ -0.75
LIMS3-204ENST00000482065 TRGV2A0A075B6R0 118 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 IGHV1OR15-1A0A075B7D0 117 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 NBDYA0A0U1RRE5 68 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 TCL1AP56279 114 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 RAB2AP61019 212 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 SOHLH1Q5JUK2 328 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 LYPD1Q8N2G4 141 aa10.35□□□□□ -0.75
LIMS3-204ENST00000482065 DIRC3C9JPN6 131 aa10.34□□□□□ -0.75
LIMS3-204ENST00000482065 SPINK4O60575 86 aa10.34□□□□□ -0.75
LIMS3-204ENST00000482065 ACOT6Q3I5F7 207 aaPredicted RBP10.34□□□□□ -0.75
LIMS3-204ENST00000482065 HYLS1Q96M11 299 aa10.34□□□□□ -0.75
LIMS3-204ENST00000482065 ARPC5LQ9BPX5 153 aa10.34□□□□□ -0.75
LIMS3-204ENST00000482065 TRBV7-9A0A0J9YWB2 115 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms