RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	DLX6	P56179	175 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	SRSF2	Q01130	221 aa	Known RBP	3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	PAX8	Q06710	450 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZNF816	Q0VGE8	651 aa	Predicted RBP	3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	PAPPA-AS1	Q5QFB9	102 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM170B	Q5T4T1	132 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM104B	Q5XKR9	115 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM159A	Q6UWV7	190 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520		Q6ZR03	302 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520		Q71RC1	249 aa	Predicted RBP	3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	NFE4	Q86UQ8	179 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	LYPD1	Q8N2G4	141 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	C3orf22	Q8N5N4	141 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	C15orf53	Q8NAA6	179 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM101	Q96IK0	257 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM167A-AS1	Q96KT0	104 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	CARD19	Q96LW7	228 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	DUX5	Q96PT3	197 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	S1PR3	Q99500	378 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRGV9	Q99603	122 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	PRADC1	Q9BSG0	188 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	MRPL20	Q9BYC9	149 aa	Known RBP	3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM14B	Q9NUH8	114 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	KLRF1	Q9NZS2	232 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	TP73-AS1	Q9UF72	201 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	FZR1	Q9UM11	496 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	PROCR	Q9UNN8	238 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	HIGD1A	Q9Y241	93 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	AKAP13	Q12802	2813 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	DOCK11	Q5JSL3	2073 aa		3.71	□□□□□ -1.82
PTCD3-212	ENST00000477520	CACNA1B	Q00975	2339 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520		A0A096LNJ9	63 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRAV8-4	A0A0B4J246	113 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	NPFF	O15130	113 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	EFNA2	O43921	213 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	COX7A2P2	O60397	106 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	SS18L1	O75177	396 aa	Predicted RBP	3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	NDUFA7	O95182	113 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	NCR2	O95944	276 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	NGF	P01138	241 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	ORM1	P02763	201 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	PRSS1	P07477	247 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520		P0DMU3	169 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM231A	P0DMU4	169 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM231C	P0DMU5	169 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	DEFA4	P12838	97 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	LIF	P15018	202 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	CXCL5	P42830	114 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	PSMB2	P49721	201 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	EMP1	P54849	157 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	DIAPH2-AS1	Q14236	149 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	PLGLA	Q15195	96 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	C3AR1	Q16581	482 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	C10orf113	Q5VZT2	155 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	LINC00526	Q96FQ7	95 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	TIMD4	Q96H15	378 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	LINC01587	Q99440	93 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	PPDPF	Q9H3Y8	114 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	OTOR	Q9NRC9	128 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	F11R	Q9Y624	299 aa	Known RBP	3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	DCHS1	Q96JQ0	3298 aa		3.7	□□□□□ -1.82
PTCD3-212	ENST00000477520	DMD	P11532	3685 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	SPEG	Q15772	3267 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	CACNA1C	Q13936	2221 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	IGHV3OR15-7	A0A075B7D8	119 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	IGHV1-45	A0A0A0MS14	117 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRAV2	A0A0B4J234	112 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	WI2-2373I1.2	A0A1W2PRP0	233 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	PGP	A6NDG6	321 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZNF785	A8K8V0	405 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520		H3BT86	120 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	SLC25A20	O43772	301 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZFAND5	O76080	213 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	TCRA	P04437	139 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	CRYGD	P07320	174 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	B4GALT1	P15291	398 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	CA6	P23280	308 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	CD40	P25942	277 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	PPIF	P30405	207 aa	Known RBP	3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	IFI27	P40305	119 aa	Predicted RBP	3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	BRWD1-AS2	P59051	145 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	ERH	P84090	104 aa	Known RBP	3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	PRCD	Q00LT1	54 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	MZT1	Q08AG7	82 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	C19orf54	Q5BKX5	351 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	DEFB121	Q5J5C9	76 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	C9orf153	Q5TBE3	101 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZC2HC1B	Q5TFG8	222 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	AAED1	Q7RTV5	226 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	COX8C	Q7Z4L0	72 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	AMN1	Q8IY45	258 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	ANKRD29	Q8N6D5	301 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM75	Q8N9X5	138 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	THAP8	Q8NA92	274 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	NPIPB3	Q92617	1050 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	FXYD5	Q96DB9	178 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	IMMP1L	Q96LU5	166 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	C18orf15	Q96N68	181 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	DEFB126	Q9BYW3	111 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	PRRG4	Q9BZD6	226 aa		3.69	□□□□□ -1.82

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