RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TEX29Q8N6K0 151 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.21□□□□□ -2.22
VPS50-212ENST00000476413 LIMD2Q9BT23 127 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 HSPB8Q9UJY1 196 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 TRAPPC2LQ9UL33 140 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 NDUFAF1Q9Y375 327 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 TRAV23DV6A0A075B6W5 121 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 PRORSD1PA6NEY8 169 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 FAM107AO95990 144 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 CD14P08571 375 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 OR10AC1Q8NH08 325 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 CLEC2BQ92478 149 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 FAM135BQ49AJ0 1406 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 DLC1Q96QB1 1528 aa1.2□□□□□ -2.22
VPS50-212ENST00000476413 ASCC3Q8N3C0 2202 aaKnown RBP1.19□□□□□ -2.22
VPS50-212ENST00000476413 NDUFA6P56556 154 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 MAXP61244 160 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 LINC00575Q6W349 94 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 OR9Q1Q8NGQ5 310 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 CCDC115Q96NT0 180 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 LXNQ9BS40 222 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 ZGRF1Q86YA3 2104 aa1.19□□□□□ -2.22
VPS50-212ENST00000476413 TRAV13-1A0A0B4J241 112 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 A0A0J9YY99 117 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 LOC107984640A0A0U1RRK4 108 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 H0YJX3 145 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 TRACP01848 142 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 FOXA3P55318 350 aaPredicted RBP1.18□□□□□ -2.22
VPS50-212ENST00000476413 SAMD13Q5VXD3 122 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 MORN4Q8NDC4 146 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 NABP2Q9BQ15 211 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 CBLN4Q9NTU7 201 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 FKBP11Q9NYL4 201 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 NOTCH1P46531 2555 aa1.18□□□□□ -2.22
VPS50-212ENST00000476413 KIAA1549LQ6ZVL6 1849 aa1.17□□□□□ -2.22
VPS50-212ENST00000476413 MED12Q93074 2177 aa1.17□□□□□ -2.22
VPS50-212ENST00000476413 H3BMG7 143 aa1.17□□□□□ -2.22
VPS50-212ENST00000476413 XIRP1Q702N8 1843 aaKnown RBP1.17□□□□□ -2.22
VPS50-212ENST00000476413 A0A1W2PPM0 123 aa1.16□□□□□ -2.22
VPS50-212ENST00000476413 C5orf58C9J3I9 102 aa1.16□□□□□ -2.22
VPS50-212ENST00000476413 TPT1P13693 172 aaKnown RBP1.16□□□□□ -2.22
VPS50-212ENST00000476413 FXYD4P59646 89 aa1.16□□□□□ -2.22
VPS50-212ENST00000476413 OCIAD2Q56VL3 154 aa1.16□□□□□ -2.22
VPS50-212ENST00000476413 OR5AK2Q8NH90 309 aa1.16□□□□□ -2.22
VPS50-212ENST00000476413 NBEAP1P0C6P0 100 aa1.15□□□□□ -2.23
VPS50-212ENST00000476413 CASC2Q6XLA1 102 aa1.15□□□□□ -2.23
VPS50-212ENST00000476413 LINC00299Q6ZSB3 139 aa1.15□□□□□ -2.23
VPS50-212ENST00000476413 CTTNBP2Q8WZ74 1663 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 C3orf85A0A1B0GTC6 90 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 SAA1P0DJI8 122 aaPredicted RBP1.14□□□□□ -2.23
VPS50-212ENST00000476413 PDE6GP18545 87 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 CRYGSP22914 178 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 S100GP29377 79 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 MUC4Q99102 2169 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 ANK1P16157 1881 aa1.14□□□□□ -2.23
VPS50-212ENST00000476413 A2MP01023 1474 aa1.13□□□□□ -2.23
VPS50-212ENST00000476413 NEDD8Q15843 81 aa1.13□□□□□ -2.23
VPS50-212ENST00000476413 NAT14Q8WUY8 206 aa1.13□□□□□ -2.23
VPS50-212ENST00000476413 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.12□□□□□ -2.23
VPS50-212ENST00000476413 ZNF469Q96JG9 3925 aaPredicted RBP1.12□□□□□ -2.23
VPS50-212ENST00000476413 GNG14A0A1W2PPG7 69 aa1.12□□□□□ -2.23
VPS50-212ENST00000476413 M0QZK8 103 aa1.12□□□□□ -2.23
VPS50-212ENST00000476413 SLC25A4P12235 298 aa1.12□□□□□ -2.23
VPS50-212ENST00000476413 IZUMO2Q6UXV1 221 aa1.12□□□□□ -2.23
VPS50-212ENST00000476413 MRPL40Q9NQ50 206 aaKnown RBP1.12□□□□□ -2.23
VPS50-212ENST00000476413 SRP9P49458 86 aaKnown RBP1.11□□□□□ -2.23
VPS50-212ENST00000476413 C5orf17Q8NAS9 161 aa1.11□□□□□ -2.23
VPS50-212ENST00000476413 TMEM35BQ8NCS4 154 aa1.11□□□□□ -2.23
VPS50-212ENST00000476413 OR51A4Q8NGJ6 313 aa1.11□□□□□ -2.23
VPS50-212ENST00000476413 BRK1Q8WUW1 75 aa1.11□□□□□ -2.23
VPS50-212ENST00000476413 CIB3Q96Q77 187 aaPredicted RBP1.11□□□□□ -2.23
VPS50-212ENST00000476413 LPAR5Q9H1C0 372 aa1.11□□□□□ -2.23
VPS50-212ENST00000476413 K7EIL1 84 aa1.1□□□□□ -2.23
VPS50-212ENST00000476413 IGHV3-30P01768 117 aa1.1□□□□□ -2.23
VPS50-212ENST00000476413 IGHV3-30-5P0DP03 117 aa1.1□□□□□ -2.23
VPS50-212ENST00000476413 CCL4P13236 92 aa1.1□□□□□ -2.23
VPS50-212ENST00000476413 RPL22P35268 128 aaKnown RBP1.1□□□□□ -2.23
VPS50-212ENST00000476413 TMEM229BQ8NBD8 167 aa1.1□□□□□ -2.23
VPS50-212ENST00000476413 GINS2Q9Y248 185 aa1.1□□□□□ -2.23
VPS50-212ENST00000476413 MYH1P12882 1939 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 FGD6Q6ZV73 1430 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 LOC107984156A0A0G2JMH3 177 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 A6NN06 94 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 TSTD3H0UI37 97 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 RPL37AP61513 92 aaKnown RBP1.09□□□□□ -2.23
VPS50-212ENST00000476413 RPS28P62857 69 aaKnown RBP1.09□□□□□ -2.23
VPS50-212ENST00000476413 BLCAPP62952 87 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 Q5XG85 94 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 KRTAP19-3Q7Z4W3 81 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 TAC4Q86UU9 113 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 ARL17AQ8IVW1 177 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 BOKQ9UMX3 212 aaPredicted RBP1.09□□□□□ -2.23
VPS50-212ENST00000476413 MPC1Q9Y5U8 109 aa1.09□□□□□ -2.23
VPS50-212ENST00000476413 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.08□□□□□ -2.24
VPS50-212ENST00000476413 LOC107986453A0A1B0GWG9 222 aa1.08□□□□□ -2.24
VPS50-212ENST00000476413 ZNF727A8MUV8 499 aa1.08□□□□□ -2.24
VPS50-212ENST00000476413 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
VPS50-212ENST00000476413 OR5A2Q8NGI9 324 aa1.08□□□□□ -2.24
VPS50-212ENST00000476413 SKA2Q8WVK7 121 aaPredicted RBP1.08□□□□□ -2.24
VPS50-212ENST00000476413 TRPM7Q96QT4 1865 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms