RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 K7EQG2 157 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 IGKV2D-40P01614 121 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-205ENST00000473099 CT45A10P0DMU9 189 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 EDN2P20800 178 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 SRSF2Q01130 221 aaKnown RBP9.67□□□□□ -0.86
VPS13D-205ENST00000473099 NSUN5P1Q3KNT7 163 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 IBA57Q5T440 356 aaKnown RBP9.67□□□□□ -0.86
VPS13D-205ENST00000473099 TMEM78Q5T7P6 136 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 IGFL4Q6B9Z1 124 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 KCNIP4Q6PIL6 250 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 RBPMS2Q6ZRY4 209 aaKnown RBP9.67□□□□□ -0.86
VPS13D-205ENST00000473099 COX8CQ7Z4L0 72 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 OR10J6PQ8NGY7 276 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 SPATA3Q8NHX4 192 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 IGKV3-7A0A075B6H7 116 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 ZNF705FA8MVS1 300 aaPredicted RBP9.66□□□□□ -0.86
VPS13D-205ENST00000473099 OR5I1Q13606 314 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 ADAMTSL5Q6ZMM2 481 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 GBGT1Q8N5D6 347 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 OR2K2Q8NGT1 345 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 DAZAP1Q96EP5 407 aaKnown RBP9.66□□□□□ -0.86
VPS13D-205ENST00000473099 SGK494Q96LW2 274 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 LINC00477Q96M19 166 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 PRR25Q96S07 402 aa9.66□□□□□ -0.86
VPS13D-205ENST00000473099 STAB1Q9NY15 2570 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 TRAV9-1A0A075B6T8 112 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 TRBV7-9A0A0J9YWB2 115 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 GATCO43716 136 aaKnown RBP9.65□□□□□ -0.86
VPS13D-205ENST00000473099 PF4P02776 101 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 ZNF138P52744 262 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 KRTAP10-3P60369 221 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 RPL19P84098 196 aaKnown RBP9.65□□□□□ -0.86
VPS13D-205ENST00000473099 DEFB114Q30KQ6 69 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 CT83Q5H943 113 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 NHLRC2Q8NBF2 726 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 OR4B1Q8NGF8 309 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 SPAG8Q99932 426 aaPredicted RBP9.65□□□□□ -0.86
VPS13D-205ENST00000473099 CITED1Q99966 193 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 VGLL1Q99990 258 aa9.65□□□□□ -0.86
VPS13D-205ENST00000473099 OR4C46A6NHA9 309 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 PRAC2D3DTV9 90 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 NPIPB6E9PJ23 425 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 SMUG1Q53HV7 270 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 PRR27Q6MZM9 219 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 OR8A1Q8NGG7 326 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 C20orf173Q96LM9 149 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 IL36BQ9NZH7 164 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 V9GYV3 84 aa9.64□□□□□ -0.87
VPS13D-205ENST00000473099 AGRNO00468 2067 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 TRBV24-1A0A075B6N3 115 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 C19orf71A6NCJ1 209 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 ZNF705GA8MUZ8 300 aaPredicted RBP9.63□□□□□ -0.87
VPS13D-205ENST00000473099 P01737 135 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 PFN1P07737 140 aaKnown RBP9.63□□□□□ -0.87
VPS13D-205ENST00000473099 ELOBQ15370 118 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 WFDC3Q8IUB2 231 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 TMEM61Q8N0U2 210 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.63□□□□□ -0.87
VPS13D-205ENST00000473099 NUDT10Q8NFP7 164 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 TMEM158Q8WZ71 300 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 NUDT11Q96G61 164 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 ZC2HC1AQ96GY0 325 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 YPEL4Q96NS1 127 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 AGPAT4-IT1Q9H0P7 198 aa9.63□□□□□ -0.87
VPS13D-205ENST00000473099 RNASE7Q9H1E1 156 aaKnown RBP9.63□□□□□ -0.87
VPS13D-205ENST00000473099 COLCA2A8K830 154 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 A8MWL6 223 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 DUSP14O95147 198 aaKnown RBP9.62□□□□□ -0.87
VPS13D-205ENST00000473099 ZNF688P0C7X2 276 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 TFPI2P48307 235 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 CMC4P56277 68 aaPredicted RBP9.62□□□□□ -0.87
VPS13D-205ENST00000473099 FAM162BQ5T6X4 162 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 HIST2H2BDQ6DRA6 164 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 EBLN2Q6P2I7 272 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 FAM24BQ8N5W8 94 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 ODF3Q96PU9 254 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 ASCL2Q99929 193 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 RPP21Q9H633 154 aaKnown RBP9.62□□□□□ -0.87
VPS13D-205ENST00000473099 URGCP-MRPS24S4R325 110 aa9.62□□□□□ -0.87
VPS13D-205ENST00000473099 XKRY2A2RUG3 117 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 FAM231BA6NCW3 169 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 HIST1H1AQ02539 215 aaPredicted RBP9.61□□□□□ -0.87
VPS13D-205ENST00000473099 ERCC8Q13216 396 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 CD300EQ496F6 205 aaPredicted RBP9.61□□□□□ -0.87
VPS13D-205ENST00000473099 PSMG4Q5JS54 123 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 FOXI2Q6ZQN5 318 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 LINC00482Q8N8I6 264 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 Q8TAT8 98 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 PYGO2Q9BRQ0 406 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 GFRA4Q9GZZ7 299 aa9.61□□□□□ -0.87
VPS13D-205ENST00000473099 SMIM27A0A1W2PRY6 76 aa9.6□□□□□ -0.87
VPS13D-205ENST00000473099 FABP5P3A8MUU1 101 aa9.6□□□□□ -0.87
VPS13D-205ENST00000473099 SAP30O75446 220 aa9.6□□□□□ -0.87
VPS13D-205ENST00000473099 INSL3P51460 131 aa9.6□□□□□ -0.87
VPS13D-205ENST00000473099 RPS20P60866 119 aaKnown RBP9.6□□□□□ -0.87
VPS13D-205ENST00000473099 TSKUQ8WUA8 353 aa9.6□□□□□ -0.87
VPS13D-205ENST00000473099 C8orf49Q96NF6 230 aa9.6□□□□□ -0.87
VPS13D-205ENST00000473099 A0A0J9YX75 114 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 A0A1W2PPQ1 181 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 IGLV1-51P01701 117 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms