RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PPP1R1CQ8WVI7 109 aa13.75□□□□□ -0.21
COL9A3-210ENST00000472880 ZNF503Q96F45 646 aa13.75□□□□□ -0.21
COL9A3-210ENST00000472880 TRBV19A0A075B6N1 114 aa13.74□□□□□ -0.21
COL9A3-210ENST00000472880 HOXA5P20719 270 aa13.74□□□□□ -0.21
COL9A3-210ENST00000472880 FGF7P21781 194 aa13.74□□□□□ -0.21
COL9A3-210ENST00000472880 SLC25A31Q9H0C2 315 aa13.74□□□□□ -0.21
COL9A3-210ENST00000472880 Q9H8V8 135 aa13.74□□□□□ -0.21
COL9A3-210ENST00000472880 MUC4Q99102 2169 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 M0R3E3 92 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 SLC25A5P05141 298 aaKnown RBP13.73□□□□□ -0.21
COL9A3-210ENST00000472880 NHLH2Q02577 135 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 TMPRSS5Q9H3S3 457 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 TMEM14CQ9P0S9 112 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 TIMM9Q9Y5J7 89 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 ALG5Q9Y673 324 aa13.73□□□□□ -0.21
COL9A3-210ENST00000472880 C7orf71A4D174 169 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 H3BNG1 76 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 DAZ2Q13117 558 aaKnown RBP13.72□□□□□ -0.21
COL9A3-210ENST00000472880 Q6ZTI0 123 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 ZNF680Q8NEM1 530 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 OR5C1Q8NGR4 320 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 CHAC2Q8WUX2 184 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 PRELID1Q9Y255 219 aa13.72□□□□□ -0.21
COL9A3-210ENST00000472880 RYR1P21817 5038 aa13.71□□□□□ -0.21
COL9A3-210ENST00000472880 MPDU1O75352 247 aa13.71□□□□□ -0.21
COL9A3-210ENST00000472880 MPC2O95563 127 aa13.71□□□□□ -0.21
COL9A3-210ENST00000472880 PET100P0DJ07 73 aa13.71□□□□□ -0.21
COL9A3-210ENST00000472880 HIST1H1EP10412 219 aaKnown RBP13.71□□□□□ -0.21
COL9A3-210ENST00000472880 PDE6HQ13956 83 aa13.71□□□□□ -0.21
COL9A3-210ENST00000472880 AAMDCQ9H7C9 122 aa13.71□□□□□ -0.21
COL9A3-210ENST00000472880 TRGV2A0A075B6R0 118 aa13.7□□□□□ -0.22
COL9A3-210ENST00000472880 PYYP10082 97 aa13.7□□□□□ -0.22
COL9A3-210ENST00000472880 ERCC8Q13216 396 aa13.7□□□□□ -0.22
COL9A3-210ENST00000472880 BLNKQ8WV28 456 aa13.7□□□□□ -0.22
COL9A3-210ENST00000472880 UPK3BQ9BT76 320 aa13.7□□□□□ -0.22
COL9A3-210ENST00000472880 Q9H3A6 140 aa13.7□□□□□ -0.22
COL9A3-210ENST00000472880 MRPS16Q9Y3D3 137 aaKnown RBP13.7□□□□□ -0.22
COL9A3-210ENST00000472880 KLLNB2CW77 178 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 NDUFB4O95168 129 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 BTN1A1Q13410 526 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 ESRGQ1W209 222 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 LINC00477Q96M19 166 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 NPCDR1Q9BY65 106 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 GSN-AS1Q9NRJ2 163 aa13.69□□□□□ -0.22
COL9A3-210ENST00000472880 CDK2AP2O75956 126 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 GCSAMLQ5JQS6 135 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 EXOC3-AS1Q8N2X6 119 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 EIF4E3Q8N5X7 224 aaKnown RBP13.68□□□□□ -0.22
COL9A3-210ENST00000472880 C11orf72Q8NBR9 251 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 THAP6Q8TBB0 222 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 LINC00467Q9BRT7 94 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 KRTAP1-5Q9BYS1 174 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 AGPAT4-IT1Q9H0P7 198 aa13.68□□□□□ -0.22
COL9A3-210ENST00000472880 TRGV1A0A0A0MS02 117 aa13.67□□□□□ -0.22
COL9A3-210ENST00000472880 RNASE4P34096 147 aaKnown RBP13.67□□□□□ -0.22
COL9A3-210ENST00000472880 CD300CQ08708 224 aa13.67□□□□□ -0.22
COL9A3-210ENST00000472880 TMEM78Q5T7P6 136 aa13.67□□□□□ -0.22
COL9A3-210ENST00000472880 FAM19A4Q96LR4 140 aa13.67□□□□□ -0.22
COL9A3-210ENST00000472880 MBD2Q9UBB5 411 aa13.67□□□□□ -0.22
COL9A3-210ENST00000472880 FUT9Q9Y231 359 aa13.67□□□□□ -0.22
COL9A3-210ENST00000472880 IGKV2-40A0A087WW87 121 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-210ENST00000472880 A0A1W2PPQ1 181 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 ZNF324O75467 553 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-210ENST00000472880 IGKV2D-40P01614 121 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-210ENST00000472880 GPX1P07203 203 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 ICAM4Q14773 271 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 ANXA2RQ3ZCQ2 193 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 C18orf15Q96N68 181 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 SLC25A2Q9BXI2 301 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 WDR61Q9GZS3 305 aaKnown RBP13.66□□□□□ -0.22
COL9A3-210ENST00000472880 HSPB11Q9Y547 144 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 ABCA13Q86UQ4 5058 aa13.66□□□□□ -0.22
COL9A3-210ENST00000472880 CRISP2P16562 243 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 RPL12P30050 165 aaKnown RBP13.65□□□□□ -0.22
COL9A3-210ENST00000472880 TCL1AP56279 114 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 FAM122CQ6P4D5 195 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 C9orf47Q6ZRZ4 202 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 SPATA12Q7Z6I5 190 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 VSIG2Q96IQ7 327 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 ATP5SQ99766 215 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 KRTAP4-5Q9BYR2 181 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 MED28Q9H204 178 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 KCNIP2Q9NS61 270 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 HSPG2P98160 4391 aa13.65□□□□□ -0.22
COL9A3-210ENST00000472880 A0A096LPF7 62 aa13.64□□□□□ -0.23
COL9A3-210ENST00000472880 RGS13O14921 159 aa13.64□□□□□ -0.23
COL9A3-210ENST00000472880 NMBP08949 121 aa13.64□□□□□ -0.23
COL9A3-210ENST00000472880 MIR17HGQ75NE6 70 aa13.64□□□□□ -0.23
COL9A3-210ENST00000472880 KLF12Q9Y4X4 402 aa13.64□□□□□ -0.23
COL9A3-210ENST00000472880 SPINK4O60575 86 aa13.63□□□□□ -0.23
COL9A3-210ENST00000472880 RGS21Q2M5E4 152 aa13.63□□□□□ -0.23
COL9A3-210ENST00000472880 IBA57Q5T440 356 aaKnown RBP13.63□□□□□ -0.23
COL9A3-210ENST00000472880 MAPKAPK5-AS1Q8N8E1 139 aa13.63□□□□□ -0.23
COL9A3-210ENST00000472880 FAM167A-AS1Q96KT0 104 aa13.63□□□□□ -0.23
COL9A3-210ENST00000472880 ARPC5LQ9BPX5 153 aa13.63□□□□□ -0.23
COL9A3-210ENST00000472880 MRPL32Q9BYC8 188 aaKnown RBP13.63□□□□□ -0.23
COL9A3-210ENST00000472880 OR51M1Q9H341 326 aa13.63□□□□□ -0.23
COL9A3-210ENST00000472880 NBEAP1P0C6P0 100 aa13.62□□□□□ -0.23
COL9A3-210ENST00000472880 BTF3P20290 206 aaKnown RBP13.62□□□□□ -0.23
COL9A3-210ENST00000472880 PRR9Q5T870 116 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms