RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 KRTAP4-5Q9BYR2 181 aa11.53□□□□□ -0.56
CCDC28B-204ENST00000469003 KLLNB2CW77 178 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 H3BNG1 76 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 TNP2Q05952 138 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 GCSAMLQ5JQS6 135 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 EXOC3-AS1Q8N2X6 119 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 ZNF680Q8NEM1 530 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 OR5C1Q8NGR4 320 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 ENKURQ8TC29 256 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 BLNKQ8WV28 456 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 LINC00467Q9BRT7 94 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 SLC25A2Q9BXI2 301 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 SLC25A31Q9H0C2 315 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 AGPAT4-IT1Q9H0P7 198 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 AAMDCQ9H7C9 122 aa11.52□□□□□ -0.57
CCDC28B-204ENST00000469003 A0A0J9YY99 117 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 E5RGE8 158 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 ZNF324O75467 553 aaPredicted RBP11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 C9orf47Q6ZRZ4 202 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 Q6ZTI0 123 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 THAP6Q8TBB0 222 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 FAM167A-AS1Q96KT0 104 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 NMES1Q9C002 83 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 TMPRSS5Q9H3S3 457 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 Q9H8V8 135 aa11.51□□□□□ -0.57
CCDC28B-204ENST00000469003 SIX6O95475 246 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 CRISP2P16562 243 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 CD300CQ08708 224 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 BTN1A1Q13410 526 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 ICAM4Q14773 271 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 ANXA2RQ3ZCQ2 193 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 MIR17HGQ75NE6 70 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 EIF4E3Q8N5X7 224 aaKnown RBP11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 C11orf72Q8NBR9 251 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 C18orf15Q96N68 181 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 GSN-AS1Q9NRJ2 163 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 OR5AC2Q9NZP5 309 aa11.5□□□□□ -0.57
CCDC28B-204ENST00000469003 NMBP08949 121 aa11.49□□□□□ -0.57
CCDC28B-204ENST00000469003 NBEAP1P0C6P0 100 aa11.49□□□□□ -0.57
CCDC28B-204ENST00000469003 UPK3BQ9BT76 320 aa11.49□□□□□ -0.57
CCDC28B-204ENST00000469003 MRPL32Q9BYC8 188 aaKnown RBP11.49□□□□□ -0.57
CCDC28B-204ENST00000469003 OR51M1Q9H341 326 aa11.49□□□□□ -0.57
CCDC28B-204ENST00000469003 KCNIP2Q9NS61 270 aa11.49□□□□□ -0.57
CCDC28B-204ENST00000469003 TRGV2A0A075B6R0 118 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 IGKV2-40A0A087WW87 121 aaPredicted RBP11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 H0YIZ8 118 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 PRAF2O60831 178 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 UPK1BO75841 260 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 IGKV2D-40P01614 121 aaPredicted RBP11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 GPX1P07203 203 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 RNASE4P34096 147 aaKnown RBP11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 CYCSP99999 105 aaKnown RBP11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 ESRGQ1W209 222 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 LRRC37A5PQ49AS3 106 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 TTC32Q5I0X7 151 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 TMEM78Q5T7P6 136 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 FAM122CQ6P4D5 195 aa11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 WDR61Q9GZS3 305 aaKnown RBP11.48□□□□□ -0.57
CCDC28B-204ENST00000469003 TCL1AP56279 114 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 ZFAND2AQ8N6M9 145 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 VSIG2Q96IQ7 327 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 VGLL1Q99990 258 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 PAXXQ9BUH6 204 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 Q9H3A6 140 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 ZNF492Q9P255 531 aa11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 MRPS16Q9Y3D3 137 aaKnown RBP11.47□□□□□ -0.57
CCDC28B-204ENST00000469003 TRGV1A0A0A0MS02 117 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 C16orf90A8MZG2 172 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 C17orf112F2Z3M2 114 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 SPINK4O60575 86 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 IBA57Q5T440 356 aaKnown RBP11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 PRR9Q5T870 116 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 FXYD5Q96DB9 178 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 KRTAP1-5Q9BYS1 174 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 FUT9Q9Y231 359 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 KLF12Q9Y4X4 402 aa11.46□□□□□ -0.57
CCDC28B-204ENST00000469003 TRBV7-9A0A0J9YWB2 115 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 A0A1W2PPQ1 181 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 INMT-MINDY4F8WBC2 141 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 RGS13O14921 159 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 OR10J4P0C629 311 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 IFITM3Q01628 133 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 PHYHIPLQ96FC7 376 aa11.45□□□□□ -0.58
CCDC28B-204ENST00000469003 IGHV1OR15-1A0A075B7D0 117 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 A0A096LPF7 62 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 ZNF138P52744 262 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 H2BFSP57053 126 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 PPP1R1CQ8WVI7 109 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 ATP5SQ99766 215 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 TP53TG3Q9ULZ0 132 aa11.44□□□□□ -0.58
CCDC28B-204ENST00000469003 OR7C2O60412 319 aa11.43□□□□□ -0.58
CCDC28B-204ENST00000469003 CSN1S1P47710 185 aa11.43□□□□□ -0.58
CCDC28B-204ENST00000469003 LYPD1Q8N2G4 141 aa11.43□□□□□ -0.58
CCDC28B-204ENST00000469003 ST6GAL2Q96JF0 529 aa11.43□□□□□ -0.58
CCDC28B-204ENST00000469003 ARPC5LQ9BPX5 153 aa11.43□□□□□ -0.58
CCDC28B-204ENST00000469003 MARVELD1Q9BSK0 173 aa11.43□□□□□ -0.58
CCDC28B-204ENST00000469003 RBAKDNA6NC62 111 aa11.42□□□□□ -0.58
CCDC28B-204ENST00000469003 BTF3P20290 206 aaKnown RBP11.42□□□□□ -0.58
CCDC28B-204ENST00000469003 Q6ZQT7 251 aa11.42□□□□□ -0.58
CCDC28B-204ENST00000469003 Q8TAT8 98 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms