RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FAM106AQ4KMX7 169 aa6.9□□□□□ -1.31
SYNE1-217ENST00000466159 CFAP46Q8IYW2 2715 aa6.9□□□□□ -1.31
SYNE1-217ENST00000466159 A0A087X0K7 114 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 IGHV1-69DA0A0B4J2H0 117 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 LOC389332A0A1B0GUA5 103 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 IGHV1-69P01742 117 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 S100A7P31151 101 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 IFI27P40305 119 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-217ENST00000466159 FAM104BQ5XKR9 115 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 PRSS3P2Q8NHM4 247 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 AP5S1Q9NUS5 200 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 TP73-AS1Q9UF72 201 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 CELSR2Q9HCU4 2923 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 TRBV7-1A0A0A6YYK4 115 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 hDV102S1A0JD36 115 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 FBLL1A6NHQ2 334 aaKnown RBP6.89□□□□□ -1.31
SYNE1-217ENST00000466159 ORM1P02763 201 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 OR5AL1P0C617 328 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 TSPOP30536 169 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 BMI1P35226 326 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 RAB9AP51151 201 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 TWIST1Q15672 202 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 FER1L6-AS1Q8NA97 138 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 LAMTOR2Q9Y2Q5 125 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 MOB4Q9Y3A3 225 aa6.89□□□□□ -1.31
SYNE1-217ENST00000466159 CRYBG3Q68DQ2 2970 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 TRAV41A0A0B4J266 112 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 IGHV4-38-2P0DP08 117 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 ATP5G2Q06055 141 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 LOXL1Q08397 574 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-217ENST00000466159 IL17RELQ6ZVW7 336 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 FA2HQ7L5A8 372 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 PMCHL2Q9BQD1 86 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 MAP1LC3CQ9BXW4 147 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 MSRB1Q9NZV6 116 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 TRAV8-2A0A0B4J237 113 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 FABP5P3A8MUU1 101 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 IGLC6P0CF74 106 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 MRPL51Q4U2R6 128 aaKnown RBP6.88□□□□□ -1.31
SYNE1-217ENST00000466159 STPG4Q8N801 248 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 PRELID3AQ96N28 172 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 PSMG3-AS1Q96PY0 264 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 METTL26Q96S19 204 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 CCL19Q99731 98 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 PIMREGQ9BSJ6 248 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 CSMD2Q7Z408 3487 aa6.88□□□□□ -1.31
SYNE1-217ENST00000466159 C20orf202A1L168 122 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 SMKR1H3BMG3 65 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 RPS20P60866 119 aaKnown RBP6.87□□□□□ -1.31
SYNE1-217ENST00000466159 LY6EQ16553 131 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 C19orf54Q5BKX5 351 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 DMRTA1Q5VZB9 504 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 C10orf105Q8TEF2 133 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 SLC50A1Q9BRV3 221 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 AGPAT4-IT1Q9H0P7 198 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 SIGLEC8Q9NYZ4 499 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 HSPB8Q9UJY1 196 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 U3KQK5 164 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 TRGV3P03979 118 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 PPIFP30405 207 aaKnown RBP6.87□□□□□ -1.31
SYNE1-217ENST00000466159 HINT1P49773 126 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-217ENST00000466159 FXYD7P58549 80 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 COL5A1-AS1Q5SY13 56 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 C8orf86Q6ZUL3 223 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 ORMDL3Q8N138 153 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 ZNF747Q9BV97 191 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 TMEM191AQ9H0A3 160 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 FLNCQ14315 2725 aa6.87□□□□□ -1.31
SYNE1-217ENST00000466159 A0A096LNJ9 63 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 NCR2O95944 276 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 TRBV12-3P01733 135 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 PET117Q6UWS5 81 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 MRPS16Q9Y3D3 137 aaKnown RBP6.86□□□□□ -1.31
SYNE1-217ENST00000466159 U3KQE9 123 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.86□□□□□ -1.31
SYNE1-217ENST00000466159 CACNA1AO00555 2505 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 IGHV4-30-2A0A087WSY4 118 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 RBAKDNA6NC62 111 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 NPYP01303 97 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 CKS2P33552 79 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 ATP5J2P56134 94 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 OR10AG1Q8NH19 301 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 MEGF9Q9H1U4 602 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 C11orf21Q9P2W6 132 aa6.86□□□□□ -1.31
SYNE1-217ENST00000466159 IGKV3D-20A0A0C4DH25 116 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 UNQ9165/PRO28630Q6UXU0 137 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 Q6ZQT7 251 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 UTP20O75691 2785 aaKnown RBP6.85□□□□□ -1.31
SYNE1-217ENST00000466159 TMEM8BA6NDV4 472 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 FAM223BA6NKX1 122 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 H3BUX3 64 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 GAS8-AS1O95177 125 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 ARL3P36405 182 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 SRSF2Q01130 221 aaKnown RBP6.85□□□□□ -1.31
SYNE1-217ENST00000466159 LINC01559Q495D7 138 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 LINC01545Q5VT33 79 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 CLEC2AQ6UVW9 174 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 Q6ZS46 218 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 FAM223AQ8IWN6 122 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 ST20Q9HBF5 79 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms