RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 MBP02144 154 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 ATP6V0CP27449 155 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 TAS2R60P59551 318 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 RAB2AP61019 212 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 RANP62826 216 aaKnown RBP9.33□□□□□ -0.92
COL28A1-206ENST00000465339 UBE2L3P68036 154 aaKnown RBP9.33□□□□□ -0.92
COL28A1-206ENST00000465339 FAM122CQ6P4D5 195 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 PQLC2Q6ZP29 291 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 C9orf47Q6ZRZ4 202 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 GNPNAT1Q96EK6 184 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-206ENST00000465339 DKK2Q9UBU2 259 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 YTHDF2Q9Y5A9 579 aaKnown RBP9.33□□□□□ -0.92
COL28A1-206ENST00000465339 H7BYZ3 331 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 TAAR5O14804 337 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 CSN1S1P47710 185 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 FAM222AQ5U5X8 452 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 Q8N3U1 123 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 PHYHIPLQ96FC7 376 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 NIPSNAP3BQ9BS92 247 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 AGPAT4-IT1Q9H0P7 198 aa9.32□□□□□ -0.92
COL28A1-206ENST00000465339 DEFB131BA0A096LNP1 70 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 IGLL5B9A064 214 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 G3V3Q6 166 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 SLC25A5P05141 298 aaKnown RBP9.31□□□□□ -0.92
COL28A1-206ENST00000465339 NMBP08949 121 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 ERCC8Q13216 396 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 FAM74A1Q5RGS3 127 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 TMEM78Q5T7P6 136 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 GFI1BQ5VTD9 330 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 RPL7L1Q6DKI1 246 aaKnown RBP9.31□□□□□ -0.92
COL28A1-206ENST00000465339 CDPF1Q6NVV7 123 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 ZNF493Q6ZR52 646 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 ZNF767PQ75MW2 155 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 RXFP4Q8TDU9 374 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 LINC00476Q8WZB0 136 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 Q9H3A6 140 aa9.31□□□□□ -0.92
COL28A1-206ENST00000465339 SCO2A0A1W2PP80 73 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 RBAKDNA6NC62 111 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 LYRM9A8MSI8 78 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 ARPC5O15511 151 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 AZU1P20160 251 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 CDC34P49427 236 aaPredicted RBP9.3□□□□□ -0.92
COL28A1-206ENST00000465339 KIR3DS1Q14943 382 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 ODF1Q14990 250 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 CCDC28AQ8IWP9 274 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 ARL6IP6Q8N6S5 226 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 C16orf74Q96GX8 76 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 FAM19A4Q96LR4 140 aa9.3□□□□□ -0.92
COL28A1-206ENST00000465339 IGKV2-40A0A087WW87 121 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-206ENST00000465339 TRBV7-9A0A0J9YWB2 115 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 LY6G6CO95867 125 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 IGKV2D-40P01614 121 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-206ENST00000465339 PRM2P04554 102 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 STAG3L2P0CL84 134 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 STAG3L3P0CL85 134 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 HTN1P15515 57 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 CRISP2P16562 243 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 DAD1P61803 113 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 LGALS9CQ6DKI2 356 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 RAB24Q969Q5 203 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 VGLL1Q99990 258 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 ACTR3CQ9C0K3 210 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-206ENST00000465339 SH3BGRL3Q9H299 93 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 OTORQ9NRC9 128 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 ZNF492Q9P255 531 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 APLNQ9ULZ1 77 aa9.29□□□□□ -0.92
COL28A1-206ENST00000465339 TRAV12-3A0A0B4J271 114 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 C7orf71A4D174 169 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 PGPA6NDG6 321 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 KLLNB2CW77 178 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 J3KRW8 73 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 HMGB3O15347 200 aaKnown RBP9.28□□□□□ -0.92
COL28A1-206ENST00000465339 EIF3GO75821 320 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL28A1-206ENST00000465339 GPX1P07203 203 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 ZNF138P52744 262 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 CMTM2Q8TAZ6 248 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 TMEM263Q8WUH6 116 aaKnown RBP9.28□□□□□ -0.92
COL28A1-206ENST00000465339 FAM210BQ96KR6 192 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 PYGO2Q9BRQ0 406 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 TIMM8BQ9Y5J9 83 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-206ENST00000465339 LYSTQ99698 3801 aa9.28□□□□□ -0.92
COL28A1-206ENST00000465339 IGHV4-4A0A075B6R2 117 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 PLAC8L1A1L4L8 177 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 HMSDA8MTL9 139 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 DIRC3C9JPN6 131 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 CXorf1O96002 111 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 ARL14EPLP0DKL9 152 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 ZNF345Q14585 488 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 SUN5Q8TC36 379 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 RNASE8Q8TDE3 154 aaKnown RBP9.27□□□□□ -0.93
COL28A1-206ENST00000465339 HYLS1Q96M11 299 aa9.27□□□□□ -0.93
COL28A1-206ENST00000465339 A0A0D9SG52 128 aa9.26□□□□□ -0.93
COL28A1-206ENST00000465339 SMLR1H3BR10 107 aa9.26□□□□□ -0.93
COL28A1-206ENST00000465339 ZNF324O75467 553 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-206ENST00000465339 RNASE4P34096 147 aaKnown RBP9.26□□□□□ -0.93
COL28A1-206ENST00000465339 CD300CQ08708 224 aa9.26□□□□□ -0.93
COL28A1-206ENST00000465339 KCNRGQ8N5I3 272 aa9.26□□□□□ -0.93
COL28A1-206ENST00000465339 ZFAND2AQ8N6M9 145 aa9.26□□□□□ -0.93
COL28A1-206ENST00000465339 TMED6Q8WW62 240 aa9.26□□□□□ -0.93
COL28A1-206ENST00000465339 LINC00467Q9BRT7 94 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms