RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PAXXQ9BUH6 204 aa8.46□□□□□ -1.06
USP40-210ENST00000454354 AGPAT4-IT1Q9H0P7 198 aa8.46□□□□□ -1.06
USP40-210ENST00000454354 NOP10Q9NPE3 64 aaKnown RBP8.46□□□□□ -1.06
USP40-210ENST00000454354 MBD2Q9UBB5 411 aa8.46□□□□□ -1.06
USP40-210ENST00000454354 TRAV12-3A0A0B4J271 114 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 C7orf71A4D174 169 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 J3KRW8 73 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 NMBP08949 121 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 NBEAP1P0C6P0 100 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 ERCC8Q13216 396 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 ICAM4Q14773 271 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 Q6ZR54 194 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 PHYHIPLQ96FC7 376 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 LINC00467Q9BRT7 94 aa8.45□□□□□ -1.06
USP40-210ENST00000454354 TRBV7-9A0A0J9YWB2 115 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 F5H768 121 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 ZNF324O75467 553 aaPredicted RBP8.44□□□□□ -1.06
USP40-210ENST00000454354 PTTG1O95997 202 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 OR10J4P0C629 311 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 FFAR4Q5NUL3 377 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 TMEM78Q5T7P6 136 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 LYPD1Q8N2G4 141 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 RNF141Q8WVD5 230 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 ZNF503Q96F45 646 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 ALG5Q9Y673 324 aa8.44□□□□□ -1.06
USP40-210ENST00000454354 IGKV2-40A0A087WW87 121 aaPredicted RBP8.43□□□□□ -1.06
USP40-210ENST00000454354 A0A1B0GVY2 172 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 SNURFLB1AK76 121 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 RTL8CO15255 209 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 OR7C2O60412 319 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 IFNA5P01569 189 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 IGKV2D-40P01614 121 aaPredicted RBP8.43□□□□□ -1.06
USP40-210ENST00000454354 CD300CQ08708 224 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 DAZ2Q13117 558 aaKnown RBP8.43□□□□□ -1.06
USP40-210ENST00000454354 BTN1A1Q13410 526 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 ANXA2RQ3ZCQ2 193 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 KHDC3LQ587J8 217 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 FAM122CQ6P4D5 195 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 ZFAND2AQ8N6M9 145 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 C11orf72Q8NBR9 251 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 ZNF680Q8NEM1 530 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 VGLL1Q99990 258 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 SMIM3Q9BZL3 60 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 ZNF492Q9P255 531 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 KIAA1109Q2LD37 5005 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 DNAH11Q96DT5 4516 aa8.43□□□□□ -1.06
USP40-210ENST00000454354 RBAKDNA6NC62 111 aa8.42□□□□□ -1.06
USP40-210ENST00000454354 M0R2N4 97 aa8.42□□□□□ -1.06
USP40-210ENST00000454354 UBE2L3P68036 154 aaKnown RBP8.42□□□□□ -1.06
USP40-210ENST00000454354 PRR9Q5T870 116 aa8.42□□□□□ -1.06
USP40-210ENST00000454354 SCGB1C1Q8TD33 95 aa8.42□□□□□ -1.06
USP40-210ENST00000454354 WFDC1Q9HC57 220 aa8.42□□□□□ -1.06
USP40-210ENST00000454354 IGLV2-18A0A075B6J9 118 aa8.41□□□□□ -1.06
USP40-210ENST00000454354 GPX1P07203 203 aa8.41□□□□□ -1.06
USP40-210ENST00000454354 ZNF138P52744 262 aa8.41□□□□□ -1.06
USP40-210ENST00000454354 TAS2R45P59539 299 aa8.41□□□□□ -1.06
USP40-210ENST00000454354 EIF4E3Q8N5X7 224 aaKnown RBP8.41□□□□□ -1.06
USP40-210ENST00000454354 C18orf15Q96N68 181 aa8.41□□□□□ -1.06
USP40-210ENST00000454354 Q9H3A6 140 aa8.41□□□□□ -1.06
USP40-210ENST00000454354 DYNC1H1Q14204 4646 aaKnown RBP8.41□□□□□ -1.06
USP40-210ENST00000454354 GAGE12BA1L429 117 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 H3BNG1 76 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 GAGE7O76087 117 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 NUDT3O95989 172 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 GAGE12FP0CL80 117 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 GAGE12GP0CL81 117 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 GAGE12IP0CL82 117 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 M6PRP20645 277 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 HOXA5P20719 270 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 RNASE4P34096 147 aaKnown RBP8.4□□□□□ -1.06
USP40-210ENST00000454354 TCL1AP56279 114 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 RANP62826 216 aaKnown RBP8.4□□□□□ -1.06
USP40-210ENST00000454354 ACOT6Q3I5F7 207 aaPredicted RBP8.4□□□□□ -1.06
USP40-210ENST00000454354 IBA57Q5T440 356 aaKnown RBP8.4□□□□□ -1.06
USP40-210ENST00000454354 Q6ZTI0 123 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 ATG101Q9BSB4 218 aa8.4□□□□□ -1.06
USP40-210ENST00000454354 TRAV26-1A0A087WT03 109 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 PRSS29PA6NIE9 313 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 DIRC3C9JPN6 131 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 CSN1S1P47710 185 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 PQLC2Q6ZP29 291 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 OR2G3Q8NGZ4 309 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 ZNRF2Q8NHG8 242 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 Q8TAT8 98 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 RXFP4Q8TDU9 374 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 TMED6Q8WW62 240 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 ASB13Q8WXK3 278 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 GNPNAT1Q96EK6 184 aaPredicted RBP8.39□□□□□ -1.07
USP40-210ENST00000454354 AQP10Q96PS8 301 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 TMPRSS5Q9H3S3 457 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 GSN-AS1Q9NRJ2 163 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 LINC00588Q9Y4M8 146 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 LENEPQ9Y5L5 61 aa8.39□□□□□ -1.07
USP40-210ENST00000454354 IGHV1OR15-1A0A075B7D0 117 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 RGS13O14921 159 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 SPINK4O60575 86 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 CCL18P55774 89 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 RAB2AP61019 212 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 OR5I1Q13606 314 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 ZNF266Q14584 549 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms