RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 KRTAP21-1Q3LI58 79 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 IZUMO2Q6UXV1 221 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 CASC2Q6XLA1 102 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 ZCCHC23Q6ZST2 131 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 TMEM229BQ8NBD8 167 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 RMND5BQ96G75 393 aaPredicted RBP0.46□□□□□ -2.34
USP40-209ENST00000452724 CIB3Q96Q77 187 aaPredicted RBP0.46□□□□□ -2.34
USP40-209ENST00000452724 MED31Q9Y3C7 131 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 ZFC3H1O60293 1989 aaKnown RBP0.46□□□□□ -2.34
USP40-209ENST00000452724 CASP8AP2Q9UKL3 1982 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 BCL9O00512 1426 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 ASCC3Q8N3C0 2202 aaKnown RBP0.45□□□□□ -2.34
USP40-209ENST00000452724 MYH7BA7E2Y1 1941 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 TRAV13-1A0A0B4J241 112 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 PGRMC1O00264 195 aaKnown RBP0.45□□□□□ -2.34
USP40-209ENST00000452724 GYPBP06028 91 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 DNAJB13P59910 316 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 MAXP61244 160 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 LSM3P62310 102 aaKnown RBP0.45□□□□□ -2.34
USP40-209ENST00000452724 TMEM128Q5BJH2 165 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 C5orf17Q8NAS9 161 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 MORN4Q8NDC4 146 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 C10orf95Q9H7T3 257 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 C19orf12Q9NSK7 152 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 MPC1Q9Y5U8 109 aa0.45□□□□□ -2.34
USP40-209ENST00000452724 MYO18AQ92614 2054 aaKnown RBP0.44□□□□□ -2.34
USP40-209ENST00000452724 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.44□□□□□ -2.34
USP40-209ENST00000452724 C3orf85A0A1B0GTC6 90 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 FXYD6P3P58550 94 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 RPS28P62857 69 aaKnown RBP0.44□□□□□ -2.34
USP40-209ENST00000452724 HRCT1Q6UXD1 115 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 Q6ZQY7 126 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 TCTEX1D1Q8N7M0 179 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 CLEC2BQ92478 149 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 NABP2Q9BQ15 211 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 ZCCHC11Q5TAX3 1644 aaKnown RBP0.44□□□□□ -2.34
USP40-209ENST00000452724 MGAMO43451 1857 aa0.44□□□□□ -2.34
USP40-209ENST00000452724 HEATR1Q9H583 2144 aaKnown RBP0.43□□□□□ -2.34
USP40-209ENST00000452724 LOC107986453A0A1B0GWG9 222 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 ARL5CA6NH57 179 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 IFITM5A6NNB3 132 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 SULT1C4O75897 302 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 CCL4P13236 92 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 RPL22P35268 128 aaKnown RBP0.43□□□□□ -2.34
USP40-209ENST00000452724 NEDD8Q15843 81 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 ASB16-AS1Q495Z4 193 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 C10orf99Q6UWK7 81 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 SMIM15Q7Z3B0 74 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 NAT14Q8WUY8 206 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 SKA2Q8WVK7 121 aaPredicted RBP0.43□□□□□ -2.34
USP40-209ENST00000452724 AP1S3Q96PC3 154 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 SELENOSQ9BQE4 189 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 CBLN4Q9NTU7 201 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 COL24A1Q17RW2 1714 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 TET1Q8NFU7 2136 aa0.43□□□□□ -2.34
USP40-209ENST00000452724 ALPK3Q96L96 1907 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 UBR2Q8IWV8 1755 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 MDN1Q9NU22 5596 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 A0A0D9SG42 100 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 A0A1W2PPB8 328 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 A0A1W2PRS3 328 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 PRORSD1PA6NEY8 169 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 BBIP1A8MTZ0 92 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 KIR3DP1A8MWS1 328 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 RPL7P18124 248 aaKnown RBP0.42□□□□□ -2.34
USP40-209ENST00000452724 CRYGSP22914 178 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 SAMD13Q5VXD3 122 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 Q6ZS92 163 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 C3orf62Q6ZUJ4 267 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 DEFB132Q7Z7B7 95 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 OR5A2Q8NGI9 324 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 CCL19Q99731 98 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 LIMD2Q9BT23 127 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 NIT2Q9NQR4 276 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 SPANXA1Q9NS26 97 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 JPT1Q9UK76 154 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 PIK3C2AO00443 1686 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 MUC5ACP98088 5654 aa0.42□□□□□ -2.34
USP40-209ENST00000452724 A2MP01023 1474 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 ADGBQ8N7X0 1667 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 LOC107984640A0A0U1RRK4 108 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 SLC25A4P12235 298 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 S100GP29377 79 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 ETV6P41212 452 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 RPL37AP61513 92 aaKnown RBP0.41□□□□□ -2.34
USP40-209ENST00000452724 BLCAPP62952 87 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 XAF1Q6GPH4 301 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 TEX29Q8N6K0 151 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 TMEM35BQ8NCS4 154 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 PLAC4Q8WY50 150 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 CCDC115Q96NT0 180 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 LPAR5Q9H1C0 372 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 SPANXCQ9NY87 97 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 FKBP11Q9NYL4 201 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 MRPL35Q9NZE8 188 aaKnown RBP0.41□□□□□ -2.34
USP40-209ENST00000452724 TRAPPC2LQ9UL33 140 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 ZNF462Q96JM2 2506 aa0.41□□□□□ -2.34
USP40-209ENST00000452724 MYO5AQ9Y4I1 1855 aaKnown RBP0.41□□□□□ -2.34
USP40-209ENST00000452724 DLC1Q96QB1 1528 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 PLXNA4Q9HCM2 1894 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms