RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TPRKBQ9Y3C4 175 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 SPEF2Q9C093 1822 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF638Q14966 1978 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 PVALEFA0A1B0GWK0 134 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 SLC25A5P05141 298 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 TRGC1P0CF51 173 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 AQP4P55087 323 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 PLGLB1Q02325 96 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 EBI3Q14213 229 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 KRTAP24-1Q3LI83 254 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 Q5XG85 94 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF880Q6PDB4 577 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 C7orf65Q6ZTY9 151 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 DOCK4Q8N1I0 1966 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 PP6455Q8WZ26 134 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 PKMYT1Q99640 499 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 UPK3BQ9BT76 320 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 DOCK9Q9BZ29 2069 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 SCN1AP35498 2009 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 CACNA1SQ13698 1873 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF609O15014 1411 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 IGKV1OR2-108A0A075B7D4 117 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 H7C2G1 150 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 C19orf84I3L1E1 186 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 HBDP02042 147 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 PMP2P02689 132 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 HLA-DRB4P13762 266 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 HINT1P49773 126 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 CIRBPQ14011 172 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 CDK5R1Q15078 307 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 SVBPQ8N300 66 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 Q8N9P0 234 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 AQP3Q92482 292 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 HLA-DRB4X5D2U9 266 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 KDM3BQ7LBC6 1761 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 TIAM2Q8IVF5 1701 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 LOC107986453A0A1B0GWG9 222 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 NOVP48745 357 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 S100A10P60903 97 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SNRPD3P62318 126 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 ATOH7Q8N100 152 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 MORN4Q8NDC4 146 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 UBALD1Q8TB05 177 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 NAT14Q8WUY8 206 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SPANXDQ9BXN6 97 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 LY96Q9Y6Y9 160 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 APC2O95996 2303 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 COL1A1P02452 1464 aaPredicted RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SONP18583 2426 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 MYOM3Q5VTT5 1437 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SBF1O95248 1867 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 NLRC5Q86WI3 1866 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 FMN2Q9NZ56 1722 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 C11orf86A6NJI1 115 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF736B4DX44 427 aaPredicted RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 PGLYRP1O75594 196 aaPredicted RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 DEFA4P12838 97 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 CKS2P33552 79 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 RNASE4P34096 147 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 FUSP35637 526 aaKnown RBP eCLIP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 FAM229BQ4G0N7 80 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SNX29P2Q8IUI4 249 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SPANXA2-OT1Q8N9U9 137 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 OR8B2Q96RD0 313 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 BOKQ9UMX3 212 aaPredicted RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 PHRF1Q9P1Y6 1649 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 PCM1Q15154 2024 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 NUP205Q92621 2012 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 OTOFQ9HC10 1997 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 AKAP11Q9UKA4 1901 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 MBD5Q9P267 1494 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 TRGV5A0A0B4J1U4 118 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 IGKV3D-20A0A0C4DH25 116 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 YPEL1O60688 119 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 IGKV3-15P01624 115 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 MGST1P10620 155 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 CD24P25063 80 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM258P61165 79 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 LYZL1Q6UWQ5 148 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 PHF5AQ7RTV0 110 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 C10orf111Q8N326 155 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 OR5AK2Q8NH90 309 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 SAR1AQ9NR31 198 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 FKBP11Q9NYL4 201 aa1.53□□□□□ -2.16
CCDC88A-208ENST00000444458 ANKARQ7Z5J8 1434 aa1.53□□□□□ -2.17
CCDC88A-208ENST00000444458 E9PCH4 1651 aa1.53□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF106Q9H2Y7 1883 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 TRAV30A0A087WSZ9 112 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 IFITM5A6NNB3 132 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 A8MUU9 505 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF727A8MUV8 499 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 SYNGR2O43760 224 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 CTSDP07339 412 aaPredicted RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 CISD3P0C7P0 127 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 CRYGAP11844 174 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 FABP4P15090 132 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 PEBP1P30086 187 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF816Q0VGE8 651 aaPredicted RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 DIAPH2-AS1Q14236 149 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms