RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 A0A087X0K7 114 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 IGHV3-23P01764 117 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 EGR2P11161 476 aaPredicted RBP12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 PAX8Q06710 450 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 EBI3Q14213 229 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 VMO1Q7Z5L0 202 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 RNASE8Q8TDE3 154 aaKnown RBP12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 RABAC1Q9UI14 185 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 SMAD5-AS1Q9Y6J3 95 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 MAP1AP78559 2803 aaPredicted RBP12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 ARHGAP32A7KAX9 2087 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 USP9YO00507 2555 aaPredicted RBP12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 LOC389332A0A1B0GUA5 103 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 OR2T8A6NH00 312 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 NCBP2LA6PVI3 153 aaKnown RBP12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 SCGB2A1O75556 95 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 IGHG4P01861 327 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 CTSGP08311 255 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 IGLC6P0CF74 106 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 GPR183P32249 361 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 VAMP3Q15836 100 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 LGALS9BQ3B8N2 356 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 LGALS9CQ6DKI2 356 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 FER1L6-AS1Q8NA97 138 aa12.74□□□□□ -0.37
CLCNKA-203ENST00000439316 ZNF80P51504 273 aaPredicted RBP12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 SRSF2Q01130 221 aaKnown RBP12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 C1orf122Q6ZSJ8 110 aa12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 OR8A1Q8NGG7 326 aa12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 Q8TAT8 98 aa12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 VGLL1Q99990 258 aa12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 SPOCK3Q9BQ16 436 aa12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 VPS13CQ709C8 3753 aa12.73□□□□□ -0.37
CLCNKA-203ENST00000439316 CD5LO43866 347 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 FGF6P10767 208 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 BMI1P35226 326 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 MINOS1Q5TGZ0 78 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 OR4C5Q8NGB2 326 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 PSMG3-AS1Q96PY0 264 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 MINOS1-NBL1R4GNA1 71 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 IGHV7-81A0A0B4J1V7 117 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 HBDP02042 147 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 ZNF575Q86XF7 245 aa12.72□□□□□ -0.37
CLCNKA-203ENST00000439316 GOSR1O95249 250 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 NPYP01303 97 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 TMEM11P17152 192 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 FOXE3Q13461 319 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 ANKRD39Q53RE8 183 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 CELSR2Q9HCU4 2923 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 WNK2Q9Y3S1 2297 aa12.71□□□□□ -0.37
CLCNKA-203ENST00000439316 HLA-DMBP28068 263 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 EFNA4P52798 201 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 RBX1P62877 108 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 ERASQ7Z444 233 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 OR1N2Q8NGR9 330 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 S100A7P31151 101 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 CKS2P33552 79 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 TWIST1Q15672 202 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 IGFL4Q6B9Z1 124 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 CNFNQ9BYD5 112 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 NPFFR1Q9GZQ6 430 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 TENM4Q6N022 2769 aa12.7□□□□□ -0.38
CLCNKA-203ENST00000439316 A1L4Q6 167 aa12.69□□□□□ -0.38
CLCNKA-203ENST00000439316 SMKR1H3BMG3 65 aa12.69□□□□□ -0.38
CLCNKA-203ENST00000439316 Q8N9W7 124 aa12.69□□□□□ -0.38
CLCNKA-203ENST00000439316 CBY3A6NI87 242 aa12.69□□□□□ -0.38
CLCNKA-203ENST00000439316 CACNG7P62955 275 aa12.69□□□□□ -0.38
CLCNKA-203ENST00000439316 SEC11AP67812 179 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 KLK9Q2XQG4 91 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 FAM110DQ8TAY7 271 aaPredicted RBP12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 ZNF502Q8TBZ5 544 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 IFI27L1Q96BM0 104 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 RNF185Q96GF1 192 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 KLK9Q9UKQ9 250 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 PTPN13Q12923 2485 aa12.68□□□□□ -0.38
CLCNKA-203ENST00000439316 CSMD2Q7Z408 3487 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 LINC01546A6NGU7 62 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 SNAI2O43623 268 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 FXYD7P58549 80 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 TMEM97Q5BJF2 176 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 BOD1L2Q8IYS8 172 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 SIRPDQ9H106 197 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 ZFAND3Q9H8U3 227 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 HELZ2Q9BYK8 2649 aaKnown RBP12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 POLQO75417 2590 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 ZFP36P26651 326 aaKnown RBP12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 LINC01559Q495D7 138 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 CCL19Q99731 98 aa12.67□□□□□ -0.38
CLCNKA-203ENST00000439316 IGHV3OR16-8A0A075B7F1 116 aa12.66□□□□□ -0.38
CLCNKA-203ENST00000439316 FABP5P3A8MUU1 101 aa12.66□□□□□ -0.38
CLCNKA-203ENST00000439316 ABCA12Q86UK0 2595 aa12.66□□□□□ -0.38
CLCNKA-203ENST00000439316 FBN2P35556 2912 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 RBAKDNA6NC62 111 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 IGHV4-39P01824 125 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 ORM1P02763 201 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 PPBPP02775 128 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 RAB9AP51151 201 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 ERCC8Q13216 396 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 C15orf32Q32M92 178 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 AMMECR1LQ6DCA0 310 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 MAP1LC3AQ9H492 121 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms