RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PSMG4Q5JS54 123 aa8.78□□□□□ -1
USP4-205ENST00000431357 MUC21Q5SSG8 566 aa8.78□□□□□ -1
USP4-205ENST00000431357 DYNAPQ8N1N2 210 aa8.78□□□□□ -1
USP4-205ENST00000431357 OR8A1Q8NGG7 326 aa8.78□□□□□ -1
USP4-205ENST00000431357 TP73-AS1Q9UF72 201 aa8.78□□□□□ -1
USP4-205ENST00000431357 ABCA1O95477 2261 aa8.78□□□□□ -1
USP4-205ENST00000431357 BOD1L1Q8NFC6 3051 aa8.78□□□□□ -1
USP4-205ENST00000431357 APC2O95996 2303 aa8.78□□□□□ -1
USP4-205ENST00000431357 MAP1BP46821 2468 aaKnown RBP8.78□□□□□ -1
USP4-205ENST00000431357 RBAKDNA6NC62 111 aa8.78□□□□□ -1
USP4-205ENST00000431357 IGHV3-23P01764 117 aa8.78□□□□□ -1
USP4-205ENST00000431357 SEC11AP67812 179 aa8.78□□□□□ -1
USP4-205ENST00000431357 PAX8Q06710 450 aa8.78□□□□□ -1
USP4-205ENST00000431357 LOXL1Q08397 574 aaPredicted RBP8.78□□□□□ -1
USP4-205ENST00000431357 FAM106AQ4KMX7 169 aa8.78□□□□□ -1
USP4-205ENST00000431357 VGLL1Q99990 258 aa8.78□□□□□ -1
USP4-205ENST00000431357 CNFNQ9BYD5 112 aa8.78□□□□□ -1
USP4-205ENST00000431357 IGHG4P01861 327 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 ZNF80P51504 273 aaPredicted RBP8.77□□□□□ -1.01
USP4-205ENST00000431357 ADORA2A-AS1P86434 159 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 C2orf91Q6ZV80 131 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 DTX2Q86UW9 622 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 Q8N9W7 124 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 ZNF502Q8TBZ5 544 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 FAM110AQ9BQ89 295 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 SLC50A1Q9BRV3 221 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 MSRB2Q9Y3D2 182 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 ZNF292O60281 2723 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 LINC01546A6NGU7 62 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 SIVA1O15304 175 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 PRB4P10163 310 aaPredicted RBP8.77□□□□□ -1.01
USP4-205ENST00000431357 HSD52Q0P140 79 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 KLRB1Q12918 225 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 CD300EQ496F6 205 aaPredicted RBP8.77□□□□□ -1.01
USP4-205ENST00000431357 IFI27L1Q96BM0 104 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 SIRPDQ9H106 197 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 MAP1LC3AQ9H492 121 aa8.77□□□□□ -1.01
USP4-205ENST00000431357 ANKRD11Q6UB99 2663 aaPredicted RBP8.76□□□□□ -1.01
USP4-205ENST00000431357 MGAQ8IWI9 3026 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 NPYP01303 97 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 ORM1P02763 201 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 UCNP55089 124 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 LINC01559Q495D7 138 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 TMEM97Q5BJF2 176 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 OR9G4Q8NGQ1 327 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 Q8TAT8 98 aa8.76□□□□□ -1.01
USP4-205ENST00000431357 BUB3O43684 328 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 FGF6P10767 208 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 CACNG7P62955 275 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 BOD1L2Q8IYS8 172 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 K7EP34 96 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 UBE2E1P51965 193 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 C15orf32Q32M92 178 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 RNF185Q96GF1 192 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 AP1S3Q96PC3 154 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 SPATA25Q9BR10 227 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 COL25A1Q9BXS0 654 aaPredicted RBP8.75□□□□□ -1.01
USP4-205ENST00000431357 ZFAND3Q9H8U3 227 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 NXT2Q9NPJ8 142 aaKnown RBP8.75□□□□□ -1.01
USP4-205ENST00000431357 AKAP13Q12802 2813 aa8.75□□□□□ -1.01
USP4-205ENST00000431357 BSNQ9UPA5 3926 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 SMAD7O15105 426 aaKnown RBP8.74□□□□□ -1.01
USP4-205ENST00000431357 ZFP36P26651 326 aaKnown RBP8.74□□□□□ -1.01
USP4-205ENST00000431357 HLA-DMBP28068 263 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 SMAGPQ0VAQ4 97 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 ZNF575Q86XF7 245 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 PIP4P2Q8N4L2 257 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 PIFOQ8TCI5 191 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 MRPL53Q96EL3 112 aaKnown RBP8.74□□□□□ -1.01
USP4-205ENST00000431357 DMXL1Q9Y485 3027 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 TRAV8-6A0A0B4J262 113 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 SMKR1H3BMG3 65 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 NDUFS7O75251 213 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 CDSNQ15517 529 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 IGFL4Q6B9Z1 124 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 OR4X2Q8NGF9 303 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 PSMG3-AS1Q96PY0 264 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 GEMIN7Q9H840 131 aaKnown RBP8.74□□□□□ -1.01
USP4-205ENST00000431357 HIF1ANQ9NWT6 349 aa8.74□□□□□ -1.01
USP4-205ENST00000431357 A1L4Q6 167 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 A6NDN8 102 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 CLEC3BP05452 202 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 FCER1GP30273 86 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 SHISA2Q6UWI4 295 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 EEF1AKMT3Q96AZ1 226 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 SPXQ9BT56 116 aa8.73□□□□□ -1.01
USP4-205ENST00000431357 SMG1Q96Q15 3661 aaKnown RBP8.73□□□□□ -1.01
USP4-205ENST00000431357 RIF1Q5UIP0 2472 aaKnown RBP8.73□□□□□ -1.01
USP4-205ENST00000431357 C7orf71A4D174 169 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 ERCC8Q13216 396 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 ECSCRQ19T08 205 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 TRBV7-1A0A0A6YYK4 115 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 GAGE12HA6NDE8 117 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 C9orf118A6NHY6 69 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 H3BRM9 83 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 ATP6V0E1O15342 81 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 TNFRSF6BO95407 300 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 ODF1Q14990 250 aa8.72□□□□□ -1.01
USP4-205ENST00000431357 GTSF1LQ9H1H1 148 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms