RNA–Protein interactions for RNA: ENST00000425876.6

CDK3-201, Transcript of cyclin dependent kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK3, Length 1,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3-201ENST00000425876 CA1P00915 261 aaPredicted RBP10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BJP06899 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BOP23527 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BBP33778 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BDP58876 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BCP62807 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST2H2BEQ16778 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.93□□□□□ -0.66
CDK3-201ENST00000425876 RASL11AQ6T310 242 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 C9orf47Q6ZRZ4 202 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 FRZBQ92765 325 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BHQ93079 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BNQ99877 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 HIST1H2BMQ99879 126 aa10.93□□□□□ -0.66
CDK3-201ENST00000425876 C5orf52A6NGY3 159 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 LINC01619G3V211 115 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 NDUFA7O95182 113 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 CRIP1P50238 77 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 SYNJ2BPP57105 145 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 WDR73Q6P4I2 378 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 TCF24Q7RTU0 167 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 NEU1Q99519 415 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 GNB1LQ9BYB4 327 aa10.92□□□□□ -0.66
CDK3-201ENST00000425876 INAFM1C9JVW0 142 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 OVOL1O14753 267 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 TRGC1P0CF51 173 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 TCL1AP56279 114 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 RPL11P62913 178 aaKnown RBP10.91□□□□□ -0.66
CDK3-201ENST00000425876 SMUG1Q53HV7 270 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 FAM162BQ5T6X4 162 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 NUP35Q8NFH5 326 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 LINC01006Q8NI28 216 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 C8orf49Q96NF6 230 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 SAV1Q9H4B6 383 aaPredicted RBP10.91□□□□□ -0.66
CDK3-201ENST00000425876 LENEPQ9Y5L5 61 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 TRAPPC1Q9Y5R8 145 aa10.91□□□□□ -0.66
CDK3-201ENST00000425876 C2orf70A6NJV1 201 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 HIGD1CA8MV81 97 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 MT-ND6P03923 174 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 ZNF138P52744 262 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 FOXA3P55318 350 aaPredicted RBP10.9□□□□□ -0.66
CDK3-201ENST00000425876 TMEM78Q5T7P6 136 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 ATP5L2Q7Z4Y8 100 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 OR2D3Q8NGH3 330 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 OR1N2Q8NGR9 330 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 DPF1Q92782 380 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 C20orf173Q96LM9 149 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 AGPAT4-IT1Q9H0P7 198 aa10.9□□□□□ -0.66
CDK3-201ENST00000425876 CUBNO60494 3623 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 PRB4P10163 310 aaPredicted RBP10.9□□□□□ -0.67
CDK3-201ENST00000425876 CBLN1P23435 193 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 ID1P41134 155 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 SNRPEP62304 92 aaKnown RBP10.9□□□□□ -0.67
CDK3-201ENST00000425876 SRSF2Q01130 221 aaKnown RBP10.9□□□□□ -0.67
CDK3-201ENST00000425876 FABP9Q0Z7S8 132 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 ERCC8Q13216 396 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 KRTAP21-3Q3LHN1 58 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 C18orf65Q6ZTR6 163 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 ZNF738Q8NE65 137 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 OR11H1Q8NG94 326 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 Q8TAT8 98 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 LINC00477Q96M19 166 aa10.9□□□□□ -0.67
CDK3-201ENST00000425876 NSD1Q96L73 2696 aaPredicted RBP10.89□□□□□ -0.67
CDK3-201ENST00000425876 M0QZ24 198 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 UBE2CO00762 179 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 EDN2P20800 178 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 RBPMS2Q6ZRY4 209 aaKnown RBP10.89□□□□□ -0.67
CDK3-201ENST00000425876 KLHL30-AS1Q8NEE0 82 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 DCANP1Q8TF63 244 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 GTSF1Q8WW33 167 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 ASCL2Q99929 193 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 GPR61Q9BZJ8 451 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 PEMTQ9UBM1 199 aa10.89□□□□□ -0.67
CDK3-201ENST00000425876 XKRY2A2RUG3 117 aa10.88□□□□□ -0.67
CDK3-201ENST00000425876 SH2D1AO60880 128 aa10.88□□□□□ -0.67
CDK3-201ENST00000425876 KHDC1LQ5JSQ8 128 aa10.88□□□□□ -0.67
CDK3-201ENST00000425876 Q6AWC8 147 aa10.88□□□□□ -0.67
CDK3-201ENST00000425876 OR10J6PQ8NGY7 276 aa10.88□□□□□ -0.67
CDK3-201ENST00000425876 TRBV7-9A0A0J9YWB2 115 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 FABP5P3A8MUU1 101 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 SNURFLB1AK76 121 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 HLA-DQA1P01909 254 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 HOXA5P20719 270 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 SLURP1P55000 103 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 RPS20P60866 119 aaKnown RBP10.87□□□□□ -0.67
CDK3-201ENST00000425876 DEFB136Q30KP8 78 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 MRPL54Q6P161 138 aaKnown RBP10.87□□□□□ -0.67
CDK3-201ENST00000425876 TMEM136Q6ZRR5 245 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 MS4A6AQ9H2W1 248 aa10.87□□□□□ -0.67
CDK3-201ENST00000425876 FN1P02751 2386 aaKnown RBP10.87□□□□□ -0.67
CDK3-201ENST00000425876 A0A1B0GXF2 115 aa10.86□□□□□ -0.67
CDK3-201ENST00000425876 SPINK4O60575 86 aa10.86□□□□□ -0.67
CDK3-201ENST00000425876 ZNF80P51504 273 aaPredicted RBP10.86□□□□□ -0.67
CDK3-201ENST00000425876 NDUFA6P56556 154 aa10.86□□□□□ -0.67
CDK3-201ENST00000425876 COA6Q5JTJ3 125 aaKnown RBP10.86□□□□□ -0.67
CDK3-201ENST00000425876 MRPL18Q9H0U6 180 aaKnown RBP10.86□□□□□ -0.67
CDK3-201ENST00000425876 TSSC4Q9Y5U2 329 aaPredicted RBP10.86□□□□□ -0.67
CDK3-201ENST00000425876 NIPBLQ6KC79 2804 aaeCLIP10.86□□□□□ -0.67
CDK3-201ENST00000425876 TMEM189A5PLL7 270 aa10.86□□□□□ -0.67
CDK3-201ENST00000425876 FRMD6-AS1P0C7T7 363 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms