RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 C15orf65H3BRN8 121 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 OVOL3O00110 214 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 IGLL1P15814 213 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 FUSP35637 526 aaKnown RBP eCLIP4.87□□□□□ -1.63
SCN1A-203ENST00000409050 TRIP12Q14669 1992 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-203ENST00000409050 CKAP5Q14008 2032 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 MSRB2Q9Y3D2 182 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 IGHV3OR16-8A0A075B7F1 116 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 A0A0B4J2C4 111 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 LCNL1Q6ZST4 164 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 HEATR5BQ9P2D3 2071 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 TRAV25A0A0B4J276 109 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 C17orf58Q2M2W7 97 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 A0A1W2PRX2 142 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 H3BMG7 143 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 ATP6V0E1O15342 81 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 NDUFS7O75251 213 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 IGF2-ASQ6U949 168 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 PIFOQ8TCI5 191 aa4.86□□□□□ -1.63
SCN1A-203ENST00000409050 PDCD11Q14690 1871 aaKnown RBP4.86□□□□□ -1.63
SCN1A-203ENST00000409050 DAZ2Q13117 558 aaKnown RBP4.85□□□□□ -1.63
SCN1A-203ENST00000409050 DAZ4Q86SG3 579 aaKnown RBP4.85□□□□□ -1.63
SCN1A-203ENST00000409050 DAZ3Q9NR90 486 aaKnown RBP4.85□□□□□ -1.63
SCN1A-203ENST00000409050 MRPL35Q9NZE8 188 aaKnown RBP4.85□□□□□ -1.63
SCN1A-203ENST00000409050 F6UB75 175 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 LOXP28300 417 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-203ENST00000409050 SYNJ2BPP57105 145 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 Q0VFX4 171 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 C16orf54Q6UWD8 224 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 DMRTC2Q8IXT2 367 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-203ENST00000409050 SCRT2Q9NQ03 307 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 TMEM213A2RRL7 107 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 E7EQL1 145 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 ZNF726P1Q15940 193 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 TIMM17AQ99595 171 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 SIP14410 1827 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 CCL25O15444 150 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 ANXA2RQ3ZCQ2 193 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 ETDBQ3ZM63 59 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 NPBQ8NG41 125 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 IGKV1-16P04430 117 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 MP68P56378 58 aa4.85□□□□□ -1.63
SCN1A-203ENST00000409050 A0A087WWL8 130 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 A0A0U1RRA0 63 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 K7EMT4 169 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 NSUN5P1Q3KNT7 163 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 ANK1P16157 1881 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 UNC13CQ8NB66 2214 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 J3KT08 172 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 NDUFB1O75438 58 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 PIKFYVEQ9Y2I7 2098 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 ZSWIM8A7E2V4 1837 aa4.84□□□□□ -1.63
SCN1A-203ENST00000409050 A0A087WV48 116 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 K7ENP7 123 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 CRYBA4P53673 196 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 HAMPP81172 84 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 PRSS57Q6UWY2 283 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 ZFP2Q6ZN57 461 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 TEN1Q86WV5 123 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 ZNF491Q8N8L2 437 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 C15orf53Q8NAA6 179 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 SMKR1H3BMG3 65 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 IGKV1-39P01597 117 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 IGKV1D-39P04432 117 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 ATP5EP2Q5VTU8 51 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 RNF138Q8WVD3 245 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 C16orf74Q96GX8 76 aa4.84□□□□□ -1.64
SCN1A-203ENST00000409050 SIPA1L1O43166 1804 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 PLXNA3P51805 1871 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 LCTP09848 1927 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 APC2O95996 2303 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 EGR2P11161 476 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-203ENST00000409050 CD24P25063 80 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 COL8A2P25067 703 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 NDPQ00604 133 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 KRTAP27-1Q3LI81 207 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 ZNRF2Q8NHG8 242 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 CFHR4Q92496 578 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 ZC2HC1AQ96GY0 325 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 SPTA1P02549 2419 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 hADV29S1A0JD25 119 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 KNCNA6PVL3 124 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 LYNX1G3V0Z9 82 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 BAALC-AS2P0C853 105 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 LYNX1P0DP58 116 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 C8orf49Q96NF6 230 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 NYNRINQ9P2P1 1898 aaKnown RBP4.83□□□□□ -1.64
SCN1A-203ENST00000409050 SEC16AO15027 2179 aa4.83□□□□□ -1.64
SCN1A-203ENST00000409050 PRSS29PA6NIE9 313 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 WT1-ASQ06250 92 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 LYPD2Q6UXB3 125 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 SPATA12Q7Z6I5 190 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 TMEM219Q86XT9 240 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 BPESC1Q9GZL8 116 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 OPRPNQ99935 248 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 C11orf86A6NJI1 115 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 NBL1P41271 181 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 SUMO4Q6EEV6 95 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 MRPL36Q9P0J6 103 aaKnown RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 IGLL5B9A064 214 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms