RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 LYPD1Q8N2G4 141 aa12.66□□□□□ -0.38
NKX3-1-201ENST00000380871 C7orf71A4D174 169 aa12.65□□□□□ -0.38
NKX3-1-201ENST00000380871 CST9LQ9H4G1 147 aa12.65□□□□□ -0.38
NKX3-1-201ENST00000380871 RABAC1Q9UI14 185 aa12.65□□□□□ -0.38
NKX3-1-201ENST00000380871 CDKN1BP46527 198 aa12.65□□□□□ -0.38
NKX3-1-201ENST00000380871 ARPC1AQ92747 370 aa12.65□□□□□ -0.38
NKX3-1-201ENST00000380871 LINC00527Q9UJ94 153 aa12.65□□□□□ -0.38
NKX3-1-201ENST00000380871 TWIST1Q15672 202 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 ORMDL3Q8N138 153 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 CD5LO43866 347 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 CSPG4Q6UVK1 2322 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 ZNF575Q86XF7 245 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 C18orf15Q96N68 181 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 IGLV11-55A0A075B6I3 123 aa12.64□□□□□ -0.39
NKX3-1-201ENST00000380871 Q6AWC8 147 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 ITLN2Q8WWU7 325 aaPredicted RBP12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 PRR25Q96S07 402 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 THYN1Q9P016 225 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 IGHV3-66A0A0C4DH42 116 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 A0A1B0GW15 77 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 M0R1W7 72 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 PPIFP30405 207 aaKnown RBP12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 TMEM97Q5BJF2 176 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 SMAD5-AS1Q9Y6J3 95 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 U3KQK5 164 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 IGHV3-49A0A0A0MS15 119 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 IGHG4P01861 327 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 CKS2P33552 79 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 TMEM219Q86XT9 240 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 PCP2Q8IVA1 136 aa12.63□□□□□ -0.39
NKX3-1-201ENST00000380871 MFAP4P55083 255 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 RNF5Q99942 180 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 DKK2Q9UBU2 259 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 MYO18BQ8IUG5 2567 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 VPS13CQ709C8 3753 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 PAX8Q06710 450 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 ERCC8Q13216 396 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 OCIAD2Q56VL3 154 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 JMJD8Q96S16 334 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 SRSF8Q9BRL6 282 aaKnown RBP12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 C21orf62Q9NYP8 219 aa12.62□□□□□ -0.39
NKX3-1-201ENST00000380871 NDUFA3O95167 84 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 SAA4P35542 130 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 NMUP48645 174 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 PDE6HQ13956 83 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 TM4SF20Q53R12 229 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 DTX2Q86UW9 622 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 FER1L6-AS1Q8NA97 138 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 GAGE12BA1L429 117 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 LINC01548A6NM66 108 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 ODF3BA8MYP8 253 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 HBDP02042 147 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 EVI2AP22794 236 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 BRD3OSQ6XYD6 125 aa12.61□□□□□ -0.39
NKX3-1-201ENST00000380871 PRAC2D3DTV9 90 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 G3V318 75 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 EFNA4P52798 201 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 CCDC144NLQ6NUI1 221 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 RNF182Q8N6D2 247 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 NPBQ8NG41 125 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 TTTY13Q9BZ97 58 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 POLQO75417 2590 aa12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 ZNF207O43670 478 aaKnown RBP12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 GATA1P15976 413 aaPredicted RBP12.6□□□□□ -0.39
NKX3-1-201ENST00000380871 ORM1P02763 201 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 ZNF562Q6V9R5 426 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 RAB37Q96AX2 223 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 IFI27L1Q96BM0 104 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 PEF1Q9UBV8 284 aaKnown RBP12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 CTSGP08311 255 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 LGALS9BQ3B8N2 356 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 LGALS9CQ6DKI2 356 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 VPS25Q9BRG1 176 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 CENPEQ02224 2701 aa12.59□□□□□ -0.39
NKX3-1-201ENST00000380871 BOD1L2Q8IYS8 172 aa12.58□□□□□ -0.4
NKX3-1-201ENST00000380871 RNF185Q96GF1 192 aa12.58□□□□□ -0.4
NKX3-1-201ENST00000380871 H3BUT2 72 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 SAP30O75446 220 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 PRORYQ9H606 182 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 FLNCQ14315 2725 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 CFAP46Q8IYW2 2715 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 IGHV7-81A0A0B4J1V7 117 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 SMAD7O15105 426 aaKnown RBP12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 RPL7P18124 248 aaKnown RBP12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 SIRPDQ9H106 197 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 USP9YO00507 2555 aaPredicted RBP12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 IGLC6P0CF74 106 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 NRGNQ92686 78 aa12.57□□□□□ -0.4
NKX3-1-201ENST00000380871 KIR3DS1Q14943 382 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 LY6EQ16553 131 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 SAPCD1Q5SSQ6 148 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 USP9XQ93008 2570 aaPredicted RBP12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 IGKV2D-26A0A0A0MRZ7 120 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 ATP6V0E1O15342 81 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 LMO4P61968 165 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 Q6ZQT7 251 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 GAGE10A6NGK3 116 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 SEC11AP67812 179 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 ADAMTSL5Q6ZMM2 481 aa12.56□□□□□ -0.4
NKX3-1-201ENST00000380871 TTC9CQ8N5M4 171 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms