RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 RPL7P18124 248 aaKnown RBP10.33□□□□□ -0.76
CCDC3-202ENST00000378839 ERCC8Q13216 396 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 UBE2V1Q13404 147 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 BORCS7Q96B45 105 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 K7EQM0 130 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 ZNF207O43670 478 aaKnown RBP10.32□□□□□ -0.76
CCDC3-202ENST00000378839 BUB3O43684 328 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 PSG9Q00887 426 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 FAM106AQ4KMX7 169 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 C19orf54Q5BKX5 351 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 Q5PR19 223 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 LYZL1Q6UWQ5 148 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 GATD1Q8NB37 220 aa10.32□□□□□ -0.76
CCDC3-202ENST00000378839 IGHV4-38-2P0DP08 117 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 TSPOP30536 169 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 MPV17L2Q567V2 206 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 COX8CQ7Z4L0 72 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 COX11Q9Y6N1 276 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 ACACBO00763 2458 aa10.31□□□□□ -0.76
CCDC3-202ENST00000378839 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.3□□□□□ -0.76
CCDC3-202ENST00000378839 CSN3P07498 182 aa10.3□□□□□ -0.76
CCDC3-202ENST00000378839 USP9XQ93008 2570 aaPredicted RBP10.3□□□□□ -0.76
CCDC3-202ENST00000378839 TRAV8-2A0A0B4J237 113 aa10.3□□□□□ -0.76
CCDC3-202ENST00000378839 CSN1S1P47710 185 aa10.3□□□□□ -0.76
CCDC3-202ENST00000378839 FAM162BQ5T6X4 162 aa10.3□□□□□ -0.76
CCDC3-202ENST00000378839 AMMECR1LQ6DCA0 310 aa10.3□□□□□ -0.76
CCDC3-202ENST00000378839 CLEC2AQ6UVW9 174 aa10.3□□□□□ -0.76
CCDC3-202ENST00000378839 USP24Q9UPU5 2620 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 FBN2P35556 2912 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 TRAV40A0A0B4J280 105 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 IGHV1-69DA0A0B4J2H0 117 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 IGHV1-69P01742 117 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 Q6ZQT7 251 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 Q6ZS46 218 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 IGHV4-30-2A0A087WSY4 118 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 TMEM189A5PLL7 270 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 SAP30O75446 220 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 TRBV12-3P01733 135 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 LOXL1Q08397 574 aaPredicted RBP10.29□□□□□ -0.76
CCDC3-202ENST00000378839 NRGNQ92686 78 aa10.29□□□□□ -0.76
CCDC3-202ENST00000378839 NUDT3O95989 172 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 C10orf105Q8TEF2 133 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 CHCHD1Q96BP2 118 aaKnown RBP10.28□□□□□ -0.76
CCDC3-202ENST00000378839 hDV102S1A0JD36 115 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 CT45A10P0DMU9 189 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 IGLL1P15814 213 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 RIGQ13278 110 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 AMN1Q8IY45 258 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 TMEM190Q8WZ59 177 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 MSRB1Q9NZV6 116 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 CDKN1BP46527 198 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 ZNF493Q6ZR52 646 aa10.28□□□□□ -0.76
CCDC3-202ENST00000378839 SPG11Q96JI7 2443 aa10.27□□□□□ -0.76
CCDC3-202ENST00000378839 A0A087X0K7 114 aa10.27□□□□□ -0.77
CCDC3-202ENST00000378839 CRXO43186 299 aaPredicted RBP10.27□□□□□ -0.77
CCDC3-202ENST00000378839 CCL19Q99731 98 aa10.27□□□□□ -0.77
CCDC3-202ENST00000378839 SERTM2A0A1B0GWG4 89 aa10.27□□□□□ -0.77
CCDC3-202ENST00000378839 GAS8-AS1O95177 125 aa10.27□□□□□ -0.77
CCDC3-202ENST00000378839 IL17RELQ6ZVW7 336 aa10.27□□□□□ -0.77
CCDC3-202ENST00000378839 BBC3Q96PG8 261 aaPredicted RBP10.27□□□□□ -0.77
CCDC3-202ENST00000378839 CST9LQ9H4G1 147 aa10.27□□□□□ -0.77
CCDC3-202ENST00000378839 A0A096LNJ9 63 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 SYS1-DBNDD2H3BUS1 97 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 AVPP01185 164 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 LY6EQ16553 131 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 TMEM70Q9BUB7 260 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 C11orf21Q9P2W6 132 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 MOB4Q9Y3A3 225 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 TRAV41A0A0B4J266 112 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 D6R8Y8 96 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 IGLC6P0CF74 106 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 ORAOV1Q8WV07 137 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 EEF1AKMT3Q96AZ1 226 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 MEGF9Q9H1U4 602 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 U3KQE9 123 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 SMKR1H3BMG3 65 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 LEPROTL1O95214 131 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 IFI27P40305 119 aaPredicted RBP10.26□□□□□ -0.77
CCDC3-202ENST00000378839 UNQ9165/PRO28630Q6UXU0 137 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 U3KQK5 164 aa10.26□□□□□ -0.77
CCDC3-202ENST00000378839 TRAV9-2A0A087WT02 112 aa10.25□□□□□ -0.77
CCDC3-202ENST00000378839 AGPAT4-IT1Q9H0P7 198 aa10.25□□□□□ -0.77
CCDC3-202ENST00000378839 TRBV7-1A0A0A6YYK4 115 aa10.25□□□□□ -0.77
CCDC3-202ENST00000378839 PPIFP30405 207 aaKnown RBP10.25□□□□□ -0.77
CCDC3-202ENST00000378839 FXYD7P58549 80 aa10.25□□□□□ -0.77
CCDC3-202ENST00000378839 LCNL1Q6ZST4 164 aa10.25□□□□□ -0.77
CCDC3-202ENST00000378839 PIMREGQ9BSJ6 248 aa10.25□□□□□ -0.77
CCDC3-202ENST00000378839 BLCAPP62952 87 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 ATP5G2Q06055 141 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 MRPL51Q4U2R6 128 aaKnown RBP10.24□□□□□ -0.77
CCDC3-202ENST00000378839 OCIAD2Q56VL3 154 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 FAM104BQ5XKR9 115 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 SMIM15Q7Z3B0 74 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 KLHDC1Q8N7A1 406 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 KLK15Q9H2R5 256 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 DOPEY1Q5JWR5 2465 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 LOC389332A0A1B0GUA5 103 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 FBLL1A6NHQ2 334 aaKnown RBP10.24□□□□□ -0.77
CCDC3-202ENST00000378839 SMAD7O15105 426 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms