RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CCL28Q9NRJ3 127 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 TRAV24A0A0B4J272 114 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 SUPT4H1P63272 117 aaKnown RBP2.69□□□□□ -1.98
CSMD3-202ENST00000339701 C14orf177Q52M58 125 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 LYZL2Q7Z4W2 148 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 TEN1Q86WV5 123 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 KCNE3Q9Y6H6 103 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 CHD8Q9HCK8 2581 aa2.69□□□□□ -1.98
CSMD3-202ENST00000339701 CDAP32320 146 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TMEM14EPQ6UXP3 125 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 FGFBP3Q8TAT2 258 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 MUC21A0A0G2JKD1 596 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SRRM5B3KS81 715 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 H7C423 109 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TMEM256-PLSCR3K7ERE1 68 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 NKAPP1Q8N9T2 125 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 OR11H7Q8NGC8 314 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 NAA38Q9BRA0 125 aaKnown RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 DAZ1Q9NQZ3 744 aaKnown RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 A8MWP6 167 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 IGKV1D-33P01593 117 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 IGKV1-33P01594 117 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 IGKV3-15P01624 115 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 PFN1P07737 140 aaKnown RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 KLRD1Q13241 179 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TREML4Q6UXN2 200 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 PIP4P2Q8N4L2 257 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 NDUFA12Q9UI09 145 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 LY6G6CO95867 125 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 CSN3P07498 182 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 RPL35AP18077 110 aaKnown RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TCTEX1D4Q5JR98 221 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 LIME1Q9H400 295 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SS18L2Q9UHA2 77 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TRAV8-1A0A0A6YYK1 113 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 A0A1W2PPV9 198 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SYS1-DBNDD2H3BUS1 97 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 GAS1P54826 345 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 ACTL10Q5JWF8 245 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF474Q6S9Z5 364 aaPredicted RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 LINC01551Q86U37 167 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 KLF14Q8TD94 323 aaPredicted RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 CTAG1AP78358 180 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SPATA12Q7Z6I5 190 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 LHFPL1Q86WI0 220 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 NUP35Q8NFH5 326 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 C11orf52Q96A22 123 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 INS-IGF2F8WCM5 200 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 C6orf226Q5I0X4 101 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF826PQ6ZT77 177 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 VN1R4Q7Z5H5 301 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TIMM21Q9BVV7 248 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 PRO3102Q9H379 93 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SAA2-SAA4A0A096LPE2 208 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 CLPSL1A2RUU4 121 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 LINC01619G3V211 115 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 UQCRQO14949 82 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 TDGF1P13385 188 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF137PP52743 207 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 PCNX3Q9H6A9 2034 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 IGLV1-36A0A0B4J1U3 117 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 F5H768 121 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 RPL23P62829 140 aaKnown RBP2.68□□□□□ -1.98
CSMD3-202ENST00000339701 C5orf64Q2M2E5 130 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SP6Q3SY56 376 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 MSRB3Q8IXL7 192 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 LINC00311Q8N616 119 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 SNHG12Q9BXW3 62 aa2.68□□□□□ -1.98
CSMD3-202ENST00000339701 NDUFC2-KCTD14E9PQ53 114 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 CCL24O00175 119 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 FBXL7Q9UJT9 491 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 IGHV1-58A0A0C4DH39 117 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 NPYP01303 97 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 SPINK8P0C7L1 97 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 ERCC8Q13216 396 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 SIGLEC15Q6ZMC9 328 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 LINC01555Q8NAE3 123 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 A0A087X0K7 114 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 FAM240AA0A1B0GVK7 77 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 F8WDY8 70 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 PSG1P11464 419 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 C1orf229Q6ZS94 237 aaPredicted RBP2.67□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF114Q8NC26 417 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 SHISA3A0PJX4 238 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 C9orf118A6NHY6 69 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 ADARB2-AS1A8MUL3 147 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 DEFB108AA8MXU0 73 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 K7EP13 123 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 IGKV3-11P04433 115 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 ZFP36P26651 326 aaKnown RBP2.67□□□□□ -1.98
CSMD3-202ENST00000339701 NFE4Q86UQ8 179 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 CFHR4Q92496 578 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 TMEM133Q9H2Q1 129 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 NUPR2A6NF83 97 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 SNRPCP09234 159 aaKnown RBP2.67□□□□□ -1.98
CSMD3-202ENST00000339701 COX8AP10176 69 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 VPREB1P12018 145 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 PI3P19957 117 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 FXYD3Q14802 87 aa2.67□□□□□ -1.98
CSMD3-202ENST00000339701 VWC2Q2TAL6 325 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms