RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 FOXC2Q99958 501 aa11.4□□□□□ -0.58
SSBP3-201ENST00000326956 IGLV11-55A0A075B6I3 123 aa11.4□□□□□ -0.58
SSBP3-201ENST00000326956 TNFRSF6BO95407 300 aa11.4□□□□□ -0.58
SSBP3-201ENST00000326956 IGFBPL1Q8WX77 278 aa11.4□□□□□ -0.58
SSBP3-201ENST00000326956 IGHV3OR16-8A0A075B7F1 116 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.39□□□□□ -0.59
SSBP3-201ENST00000326956 IGHV3-35A0A0C4DH35 117 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 HLA-DMBP28068 263 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 COX8CQ7Z4L0 72 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 NPBQ8NG41 125 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 CHAC1Q9BUX1 264 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 SPENQ96T58 3664 aaKnown RBP11.39□□□□□ -0.59
SSBP3-201ENST00000326956 ABCA4P78363 2273 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 CFAP47Q6ZTR5 3102 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 PPIFP30405 207 aaKnown RBP11.39□□□□□ -0.59
SSBP3-201ENST00000326956 ODF1Q14990 250 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 ZNF48Q96MX3 618 aaPredicted RBP11.39□□□□□ -0.59
SSBP3-201ENST00000326956 NPFFR1Q9GZQ6 430 aa11.39□□□□□ -0.59
SSBP3-201ENST00000326956 DPM2O94777 84 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 NDUFA3O95167 84 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 ZNF562Q6V9R5 426 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 GTSCR1Q86UQ5 136 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 TMEM158Q8WZ71 300 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 TTTY13Q9BZ97 58 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 NDUFS8O00217 210 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 ATP5LO75964 103 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 GOSR1O95249 250 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 FXYD2P54710 66 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 KLRD1Q13241 179 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 LINC01559Q495D7 138 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 NEGR1Q7Z3B1 354 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 RNF185Q96GF1 192 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 HIGD1BQ9P298 99 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 SMPXQ9UHP9 88 aa11.38□□□□□ -0.59
SSBP3-201ENST00000326956 ZC2HC1BQ5TFG8 222 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 TMEM160Q9NX00 188 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 NHP2Q9NX24 153 aaKnown RBP11.37□□□□□ -0.59
SSBP3-201ENST00000326956 IGKV2D-26A0A0A0MRZ7 120 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 TMEM238C9JI98 176 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 ERCC8Q13216 396 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 ZNF672Q499Z4 452 aaPredicted RBP11.37□□□□□ -0.59
SSBP3-201ENST00000326956 PIFOQ8TCI5 191 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 MYOZ3Q8TDC0 251 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 CFHR4Q92496 578 aa11.37□□□□□ -0.59
SSBP3-201ENST00000326956 ARHGAP32A7KAX9 2087 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 MGAQ8IWI9 3026 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 GATA1P15976 413 aaPredicted RBP11.36□□□□□ -0.59
SSBP3-201ENST00000326956 TTC9CQ8N5M4 171 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 TIMD4Q96H15 378 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 TTC28Q96AY4 2481 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 GAS8-AS1O95177 125 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 SMIM17P0DL12 118 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 SRSF2Q01130 221 aaKnown RBP11.36□□□□□ -0.59
SSBP3-201ENST00000326956 OR11H6Q8NGC7 330 aa11.36□□□□□ -0.59
SSBP3-201ENST00000326956 TRBV25-1A0A075B6N4 114 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 TMEM8BA6NDV4 472 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 F8W735 103 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-201ENST00000326956 DTX2Q86UW9 622 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 DYNAPQ8N1N2 210 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 LINC01560Q8TB33 94 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 HHLA3Q9XRX5 114 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 UFC1Q9Y3C8 167 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 SMAD5-AS1Q9Y6J3 95 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 K7ERJ3 54 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 CTSGP08311 255 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 CCDC144NLQ6NUI1 221 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 Q8N8P6 123 aa11.35□□□□□ -0.59
SSBP3-201ENST00000326956 SMG1Q96Q15 3661 aaKnown RBP11.34□□□□□ -0.59
SSBP3-201ENST00000326956 RIF1Q5UIP0 2472 aaKnown RBP11.34□□□□□ -0.59
SSBP3-201ENST00000326956 NDPQ00604 133 aa11.34□□□□□ -0.59
SSBP3-201ENST00000326956 PIEZO2Q9H5I5 2752 aa11.34□□□□□ -0.59
SSBP3-201ENST00000326956 CNFNQ9BYD5 112 aa11.34□□□□□ -0.59
SSBP3-201ENST00000326956 ZMAT4Q9H898 229 aa11.34□□□□□ -0.59
SSBP3-201ENST00000326956 TRAV40A0A0B4J280 105 aa11.33□□□□□ -0.6
SSBP3-201ENST00000326956 LY6G5BQ8NDX9 201 aa11.33□□□□□ -0.6
SSBP3-201ENST00000326956 RAB9AP51151 201 aa11.33□□□□□ -0.6
SSBP3-201ENST00000326956 IL17RELQ6ZVW7 336 aa11.33□□□□□ -0.6
SSBP3-201ENST00000326956 CEND1Q8N111 149 aa11.33□□□□□ -0.6
SSBP3-201ENST00000326956 PRAC2D3DTV9 90 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 LY6HO94772 140 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 RNF182Q8N6D2 247 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 IGHG4P01861 327 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 LAGE3Q14657 143 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 MRPL35Q9NZE8 188 aaKnown RBP11.32□□□□□ -0.6
SSBP3-201ENST00000326956 TEX48A0A1B0GUV7 120 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 LINC01546A6NGU7 62 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 J3QR89 54 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 PRTN3P24158 256 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 TMEM78Q5T7P6 136 aa11.32□□□□□ -0.6
SSBP3-201ENST00000326956 IGHV3-66A0A0C4DH42 116 aa11.31□□□□□ -0.6
SSBP3-201ENST00000326956 M0R1W7 72 aa11.31□□□□□ -0.6
SSBP3-201ENST00000326956 SPANXN1Q5VSR9 72 aa11.31□□□□□ -0.6
SSBP3-201ENST00000326956 SLC50A1Q9BRV3 221 aa11.31□□□□□ -0.6
SSBP3-201ENST00000326956 HIST1H4GQ99525 98 aa11.31□□□□□ -0.6
SSBP3-201ENST00000326956 ADGRG4Q8IZF6 3080 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 IGHV3OR16-13A0A075B7E8 117 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 IGHV3-74A0A0B4J1X5 117 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 FAM90A27PA6NNH2 459 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 ECSCRQ19T08 205 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 SPTBN2O15020 2390 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms