RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LOXP28300 417 aaPredicted RBP15.39■□□□□ 0.05
USP48-201ENST00000308271 ATXN8Q156A1 80 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 FAM208BQ5VWN6 2430 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 IGHV3OR16-12A0A075B7B8 117 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 TRBV7-1A0A0A6YYK4 115 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 THBDP07204 575 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 AZU1P20160 251 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 PPDPFLQ8WWR9 84 aa15.39■□□□□ 0.05
USP48-201ENST00000308271 MYMXA0A1B0GTQ4 84 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 M0R2P5 195 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 MORN5Q5VZ52 161 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 ATP6V0BQ99437 205 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 TMEM95Q3KNT9 176 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 C2orf66Q6UXQ4 117 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 TRAV41A0A0B4J266 112 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 DUSP14O95147 198 aaKnown RBP15.38■□□□□ 0.05
USP48-201ENST00000308271 PATE2Q6UY27 113 aa15.38■□□□□ 0.05
USP48-201ENST00000308271 IGHV3-64A0A075B6Q5 118 aa15.37■□□□□ 0.05
USP48-201ENST00000308271 F8VRH5 84 aa15.37■□□□□ 0.05
USP48-201ENST00000308271 H3BMG7 143 aa15.37■□□□□ 0.05
USP48-201ENST00000308271 DUX3Q96PT4 197 aa15.37■□□□□ 0.05
USP48-201ENST00000308271 ANKRD39Q53RE8 183 aa15.37■□□□□ 0.05
USP48-201ENST00000308271 PCP2Q8IVA1 136 aa15.37■□□□□ 0.05
USP48-201ENST00000308271 RRN3P1Q2M238 152 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 GTF3C1Q12789 2109 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 MALRD1Q5VYJ5 2156 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 A0A0G2JNJ9 132 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 LCNL1Q6ZST4 164 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 Q9UFV3 132 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 KLF12Q9Y4X4 402 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 EP400Q96L91 3159 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 C9JAW5 83 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 K7ERJ3 54 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 DIAPH2-AS1Q14236 149 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 Q6ZS92 163 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 C8orf31Q8N9H6 132 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 MOB4Q9Y3A3 225 aa15.36■□□□□ 0.05
USP48-201ENST00000308271 C2orf82Q6UX34 121 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 OR13C6PQ8NH95 151 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 IGKV1OR2-108A0A075B7D4 117 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 GP9P14770 177 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 C2orf70A6NJV1 201 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 DTX2Q86UW9 622 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 ZNF491Q8N8L2 437 aa15.35■□□□□ 0.05
USP48-201ENST00000308271 TRGV11A0A075B6L2 103 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 SAP30O75446 220 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 SLC25A16P16260 332 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 TMEM101Q96IK0 257 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 C12orf74Q32Q52 190 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 EML6Q6ZMW3 1958 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 OR11H6Q8NGC7 330 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 HLA-DRB4P13762 266 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 NDPQ00604 133 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 GTSF1Q8WW33 167 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 HLA-DRB4X5D2U9 266 aa15.34■□□□□ 0.05
USP48-201ENST00000308271 SPANXA1Q9NS26 97 aa15.33■□□□□ 0.05
USP48-201ENST00000308271 IL17RELQ6ZVW7 336 aa15.33■□□□□ 0.04
USP48-201ENST00000308271 SHISA9B4DS77 424 aa15.33■□□□□ 0.04
USP48-201ENST00000308271 ATP5J2P56134 94 aa15.33■□□□□ 0.04
USP48-201ENST00000308271 ADAMTS9Q9P2N4 1935 aa15.33■□□□□ 0.04
USP48-201ENST00000308271 LHBP01229 141 aa15.33■□□□□ 0.04
USP48-201ENST00000308271 SMIM2Q9BVW6 85 aa15.33■□□□□ 0.04
USP48-201ENST00000308271 ACACBO00763 2458 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 PRADC1Q9BSG0 188 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 TRAV12-3A0A0B4J271 114 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 TEX48A0A1B0GUV7 120 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 COL8A2P25067 703 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 ZNF876PQ49A33 203 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 AMTNQ6UX39 209 aa15.32■□□□□ 0.04
USP48-201ENST00000308271 MED13Q9UHV7 2174 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 PLA2G5P39877 138 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 C17orf77Q96MU5 243 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 LINC00527Q9UJ94 153 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 A0A087WX48 190 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 TRBV7-9A0A0J9YWB2 115 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 E7EQL1 145 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 SRSF6Q13247 344 aaKnown RBP15.31■□□□□ 0.04
USP48-201ENST00000308271 TP53TG3Q9ULZ0 132 aa15.31■□□□□ 0.04
USP48-201ENST00000308271 TRBV25-1A0A075B6N4 114 aa15.3■□□□□ 0.04
USP48-201ENST00000308271 IGKV3OR2-268A0A0C4DH90 116 aa15.3■□□□□ 0.04
USP48-201ENST00000308271 INS-IGF2F8WCM5 200 aa15.3■□□□□ 0.04
USP48-201ENST00000308271 BRWD1-AS2P59051 145 aa15.3■□□□□ 0.04
USP48-201ENST00000308271 KAAG1Q9UBP8 84 aa15.3■□□□□ 0.04
USP48-201ENST00000308271 TMEM131Q92545 1883 aa15.3■□□□□ 0.04
USP48-201ENST00000308271 CTRLP40313 264 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 PMVKQ15126 192 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 FAM110DQ8TAY7 271 aaPredicted RBP15.29■□□□□ 0.04
USP48-201ENST00000308271 TMEM141Q96I45 108 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 PTPRQQ9UMZ3 2332 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 TP53TG1Q9Y2A0 90 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 EGR2P11161 476 aaPredicted RBP15.29■□□□□ 0.04
USP48-201ENST00000308271 MORN3Q6PF18 240 aaPredicted RBP15.29■□□□□ 0.04
USP48-201ENST00000308271 LINC01587Q99440 93 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 BOD1L2Q8IYS8 172 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 ZNF503Q96F45 646 aa15.29■□□□□ 0.04
USP48-201ENST00000308271 C22orf46C9J442 243 aa15.28■□□□□ 0.04
USP48-201ENST00000308271 IGLV2-8P01709 118 aa15.28■□□□□ 0.04
USP48-201ENST00000308271 EFNA4P52798 201 aa15.28■□□□□ 0.04
USP48-201ENST00000308271 C7orf69Q9H7B7 122 aa15.28■□□□□ 0.04
USP48-201ENST00000308271 IGKV3D-20A0A0C4DH25 116 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms