RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FAM223AQ8IWN6 122 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 SHANK2-AS3Q9BTD1 123 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 FNDC4Q9H6D8 234 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-201ENST00000303395 FBXL7Q9UJT9 491 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 PSG8Q9UQ74 426 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 OBSL1O75147 1896 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 SCO2A0A1W2PP80 73 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV3-49A0A0A0MS15 119 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 TRAV8-3A0A0A6YYJ7 113 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 GRIFINA4D1Z8 144 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 CELA3AP09093 270 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 RNF183Q96D59 192 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV3OR16-10A0A075B7F0 116 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 IGKV1-5P01602 117 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 BVES-AS1Q5T3Y7 98 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 SIGLEC15Q6ZMC9 328 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 MRPL55Q7Z7F7 128 aaKnown RBP4.29□□□□□ -1.72
SCN1A-201ENST00000303395 PRIMA1Q86XR5 153 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 KAAG1Q9UBP8 84 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 DSCR9P59020 149 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 CLEC19AQ6UXS0 136 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 KIR2DL5BQ8NHK3 375 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 TRBV7-1A0A0A6YYK4 115 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 NBR2O15453 112 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 CD55P08174 381 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRR20EP86478 221 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRR20CP86479 221 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRR20DP86480 221 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRR20BP86481 221 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRR20AP86496 221 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRSS41Q7RTY9 318 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV5-10-1A0A0J9YXX1 117 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRTN3P24158 256 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 H0YGX0 51 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 CCL3P10147 92 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 CCL3L1P16619 93 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 RPL35AP18077 110 aaKnown RBP4.28□□□□□ -1.72
SCN1A-201ENST00000303395 DAD1P61803 113 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 WIPF3A6NGB9 483 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 F5H768 121 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 CGAP01215 116 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 NPYP01303 97 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 IGKV1D-33P01593 117 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 IGKV1-33P01594 117 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 IGHG2P01859 326 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 C15orf62A8K5M9 175 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 CCL4L1Q8NHW4 92 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 SHISA8B8ZZ34 492 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 C4orf51C9J302 202 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PAX9P55771 341 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 BMPERQ8N8U9 685 aa4.28□□□□□ -1.72
SCN1A-201ENST00000303395 PRB4P10163 310 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-201ENST00000303395 GUSBP1Q15486 140 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 PATE1Q8WXA2 126 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 VSIG2Q96IQ7 327 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 A0A1B0GX51 115 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 CD59P13987 128 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 MRPS36P82909 103 aaKnown RBP4.27□□□□□ -1.73
SCN1A-201ENST00000303395 C1orf159Q96HA4 380 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 CLUHP3Q96NS8 147 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 LINC00574Q9H8X3 128 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 TP73-AS1Q9UF72 201 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3OR16-13A0A075B7E8 117 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-74A0A0B4J1X5 117 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 LTAP01374 205 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 SPINK8P0C7L1 97 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 CSRP2Q16527 193 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 LY6G5BQ8NDX9 201 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 TNRC6BQ9UPQ9 1833 aaKnown RBP4.27□□□□□ -1.73
SCN1A-201ENST00000303395 NDUFC1O43677 76 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 ZNF138P52744 262 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 HERV-K104P63124 156 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 PAX8Q06710 450 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 SAP25Q8TEE9 199 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 TIMM21Q9BVV7 248 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 TMEM133Q9H2Q1 129 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 C11orf1Q9H5F2 150 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 GATA3P23771 443 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 FOXE3Q13461 319 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-35A0A0C4DH35 117 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 SRSF3P84103 164 aaKnown RBP4.27□□□□□ -1.73
SCN1A-201ENST00000303395 CEP192Q8TEP8 1941 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 ZNF503Q96F45 646 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 YPEL4Q96NS1 127 aa4.27□□□□□ -1.73
SCN1A-201ENST00000303395 TMEM89A2RUT3 159 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 SNAI2O43623 268 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 IGKV4-1P06312 121 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 SCRT2Q9NQ03 307 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 PIK3CD-AS1Q5SR53 167 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 MUC21Q5SSG8 566 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 GFI1BQ5VTD9 330 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 MUSTN1Q8IVN3 82 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 ADAMTS9Q9P2N4 1935 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 TRBV25-1A0A075B6N4 114 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-23P01764 117 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 CR1LQ2VPA4 569 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 LCN12Q6JVE5 192 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 Q6ZWC4 215 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 TIMM17AQ99595 171 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 PRO1854Q9UHT4 67 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms