RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 BORCS7Q96B45 105 aa13.02□□□□□ -0.32
CPSF4-201ENST00000292476 SNHG12Q9BXW3 62 aa13.02□□□□□ -0.32
CPSF4-201ENST00000292476 NPFFR1Q9GZQ6 430 aa13.02□□□□□ -0.32
CPSF4-201ENST00000292476 EREGO14944 169 aa13.02□□□□□ -0.33
CPSF4-201ENST00000292476 MRPS12O15235 138 aaKnown RBP13.02□□□□□ -0.33
CPSF4-201ENST00000292476 BLCAPP62952 87 aa13.02□□□□□ -0.33
CPSF4-201ENST00000292476 ATP5G2Q06055 141 aa13.02□□□□□ -0.33
CPSF4-201ENST00000292476 SIGLEC15Q6ZMC9 328 aa13.02□□□□□ -0.33
CPSF4-201ENST00000292476 GTSF1Q8WW33 167 aa13.02□□□□□ -0.33
CPSF4-201ENST00000292476 USMG5Q96IX5 58 aa13.02□□□□□ -0.33
CPSF4-201ENST00000292476 HAX1O00165 279 aa13.01□□□□□ -0.33
CPSF4-201ENST00000292476 HSBP1O75506 76 aa13.01□□□□□ -0.33
CPSF4-201ENST00000292476 C3orf79P0CE67 100 aa13.01□□□□□ -0.33
CPSF4-201ENST00000292476 NUTF2P61970 127 aaKnown RBP13.01□□□□□ -0.33
CPSF4-201ENST00000292476 GOLT1AQ6ZVE7 132 aa13.01□□□□□ -0.33
CPSF4-201ENST00000292476 TCF24Q7RTU0 167 aa13.01□□□□□ -0.33
CPSF4-201ENST00000292476 RNF114Q9Y508 228 aa13.01□□□□□ -0.33
CPSF4-201ENST00000292476 JMJD1CQ15652 2540 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 A0A1B0GW15 77 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 HOXA3O43365 443 aaPredicted RBP13□□□□□ -0.33
CPSF4-201ENST00000292476 IL4P05112 153 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 CTRLP40313 264 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 PMCHL1Q16048 86 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 Q6AWC8 147 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 GATD1Q8NB37 220 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 ZNF502Q8TBZ5 544 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 CHCHD1Q96BP2 118 aaKnown RBP13□□□□□ -0.33
CPSF4-201ENST00000292476 SGK494Q96LW2 274 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 PAM16Q9Y3D7 125 aa13□□□□□ -0.33
CPSF4-201ENST00000292476 A0A0G2JLM5 398 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 TMEM89A2RUT3 159 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 FBLL1A6NHQ2 334 aaKnown RBP12.99□□□□□ -0.33
CPSF4-201ENST00000292476 H3BTX0 84 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 PPIFP30405 207 aaKnown RBP12.99□□□□□ -0.33
CPSF4-201ENST00000292476 CAMPP49913 170 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 PRIMA1Q86XR5 153 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 EXOC3-AS1Q8N2X6 119 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 ZNF414Q96IQ9 312 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 CUBNO60494 3623 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 C20orf202A1L168 122 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 TRGV3P03979 118 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 PSG3Q16557 428 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 PRNTQ86SH4 94 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 OR2D3Q8NGH3 330 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 NDFIP1Q9BT67 221 aa12.99□□□□□ -0.33
CPSF4-201ENST00000292476 SRD5A1P18405 259 aa12.98□□□□□ -0.33
CPSF4-201ENST00000292476 TDRG1Q3Y452 100 aa12.98□□□□□ -0.33
CPSF4-201ENST00000292476 ZNF705AQ6ZN79 300 aaPredicted RBP12.98□□□□□ -0.33
CPSF4-201ENST00000292476 PGLYRP4Q96LB8 373 aa12.98□□□□□ -0.33
CPSF4-201ENST00000292476 FAM181BA6NEQ2 426 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 OR2T8A6NH00 312 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 F8W735 103 aaPredicted RBP12.97□□□□□ -0.33
CPSF4-201ENST00000292476 APOHP02749 345 aaPredicted RBP12.97□□□□□ -0.33
CPSF4-201ENST00000292476 CTSGP08311 255 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 NTF3P20783 257 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 PSG9Q00887 426 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 RELQ04864 619 aaPredicted RBP12.97□□□□□ -0.33
CPSF4-201ENST00000292476 KLHDC1Q8N7A1 406 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 SSBP4Q9BWG4 385 aaPredicted RBP12.97□□□□□ -0.33
CPSF4-201ENST00000292476 AAMDCQ9H7C9 122 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 PSG8Q9UQ74 426 aa12.97□□□□□ -0.33
CPSF4-201ENST00000292476 LOC102724200A0A096LPH7 203 aaPredicted RBP12.96□□□□□ -0.33
CPSF4-201ENST00000292476 TRAV8-1A0A0A6YYK1 113 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 M0R2Z0 102 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 CHEK1O14757 476 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 CLEC3BP05452 202 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 COX8CQ7Z4L0 72 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 FAM19A2Q8N3H0 131 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 LINC00527Q9UJ94 153 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 S4R3C0 116 aa12.96□□□□□ -0.33
CPSF4-201ENST00000292476 IGLV1-40P01703 118 aa12.96□□□□□ -0.34
CPSF4-201ENST00000292476 RPL7P18124 248 aaKnown RBP12.96□□□□□ -0.34
CPSF4-201ENST00000292476 BTF3P20290 206 aaKnown RBP12.96□□□□□ -0.34
CPSF4-201ENST00000292476 RIGQ13278 110 aa12.96□□□□□ -0.34
CPSF4-201ENST00000292476 SPATA45Q537H7 98 aa12.96□□□□□ -0.34
CPSF4-201ENST00000292476 RNASEKQ6P5S7 137 aaKnown RBP12.96□□□□□ -0.34
CPSF4-201ENST00000292476 ZC2HC1AQ96GY0 325 aa12.96□□□□□ -0.34
CPSF4-201ENST00000292476 UQCR10Q9UDW1 63 aa12.96□□□□□ -0.34
CPSF4-201ENST00000292476 A0A1B0GUT8 65 aa12.95□□□□□ -0.34
CPSF4-201ENST00000292476 PF4V1P10720 104 aa12.95□□□□□ -0.34
CPSF4-201ENST00000292476 GPR183P32249 361 aa12.95□□□□□ -0.34
CPSF4-201ENST00000292476 CSN1S1P47710 185 aa12.95□□□□□ -0.34
CPSF4-201ENST00000292476 IGHV3-23P01764 117 aa12.94□□□□□ -0.34
CPSF4-201ENST00000292476 IGHG4P01861 327 aa12.94□□□□□ -0.34
CPSF4-201ENST00000292476 OR5AL1P0C617 328 aa12.94□□□□□ -0.34
CPSF4-201ENST00000292476 RAB9AP51151 201 aa12.94□□□□□ -0.34
CPSF4-201ENST00000292476 CFHR3Q02985 330 aa12.94□□□□□ -0.34
CPSF4-201ENST00000292476 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.93□□□□□ -0.34
CPSF4-201ENST00000292476 ZNF785A8K8V0 405 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 CT45A10P0DMU9 189 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 CLEC19AQ6UXS0 136 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 C17orf77Q96MU5 243 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 C2orf70A6NJV1 201 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 TCAPO15273 167 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 CRXO43186 299 aaPredicted RBP12.93□□□□□ -0.34
CPSF4-201ENST00000292476 Q6ZS46 218 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 Q8N2B8 174 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 URB1-AS1Q96HZ7 61 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 CCDC140Q96MF4 163 aa12.93□□□□□ -0.34
CPSF4-201ENST00000292476 RABAC1Q9UI14 185 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms