RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 TRAV12-3A0A0B4J271 114 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 M0R3E3 92 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 MPDU1O75352 247 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 MED14OSP0DP75 135 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 HIST1H1EP10412 219 aaKnown RBP6.79□□□□□ -1.32
VPS41-201ENST00000265745 FGF7P21781 194 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 LEPP41159 167 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 NHLH2Q02577 135 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 GCSAMLQ5JQS6 135 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 CCDC28AQ8IWP9 274 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 S100ZQ8WXG8 99 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 MRPL53Q96EL3 112 aaKnown RBP6.79□□□□□ -1.32
VPS41-201ENST00000265745 NPCDR1Q9BY65 106 aa6.79□□□□□ -1.32
VPS41-201ENST00000265745 GPN1Q9HCN4 374 aaPredicted RBP6.79□□□□□ -1.32
VPS41-201ENST00000265745 DNAH11Q96DT5 4516 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 SCO2A0A1W2PP80 73 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 J3KRW8 73 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 TNFRSF6BO95407 300 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 SIX6O95475 246 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 CCL18P55774 89 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 DAZ2Q13117 558 aaKnown RBP6.78□□□□□ -1.32
VPS41-201ENST00000265745 ERCC8Q13216 396 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 PDE6HQ13956 83 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 RNF151Q2KHN1 245 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 THAP6Q8TBB0 222 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 LINC00477Q96M19 166 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 PYGO2Q9BRQ0 406 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 AGPAT4-IT1Q9H0P7 198 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 PRELID1Q9Y255 219 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 LINC00588Q9Y4M8 146 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 TIMM9Q9Y5J7 89 aa6.78□□□□□ -1.32
VPS41-201ENST00000265745 PKHD1P08F94 4074 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 TRAV26-1A0A087WT03 109 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 NBDYA0A0U1RRE5 68 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 GAGE12BA1L429 117 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 KLLNB2CW77 178 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 B5MCH6 92 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 E5RGE8 158 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 H0YIZ8 118 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 ZNF324O75467 553 aaPredicted RBP6.77□□□□□ -1.33
VPS41-201ENST00000265745 UPK1BO75841 260 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 GAGE7O76087 117 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 RLN2P04090 185 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 SLC25A5P05141 298 aaKnown RBP6.77□□□□□ -1.33
VPS41-201ENST00000265745 GAGE12FP0CL80 117 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 GAGE12GP0CL81 117 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 GAGE12IP0CL82 117 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 PYYP10082 97 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 M6PRP20645 277 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 HOXA5P20719 270 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 IFITM3Q01628 133 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 OR5I1Q13606 314 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 EXOC3-AS1Q8N2X6 119 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 OR5C1Q8NGR4 320 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 ENKURQ8TC29 256 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 ZNF503Q96F45 646 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 FAM167A-AS1Q96KT0 104 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 FAM19A4Q96LR4 140 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 SLC25A2Q9BXI2 301 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 NMES1Q9C002 83 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 SLC25A31Q9H0C2 315 aa6.77□□□□□ -1.33
VPS41-201ENST00000265745 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.77□□□□□ -1.33
VPS41-201ENST00000265745 C7orf71A4D174 169 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 SNURFLB1AK76 121 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 NBEAP1P0C6P0 100 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 BTF3P20290 206 aaKnown RBP6.76□□□□□ -1.33
VPS41-201ENST00000265745 PTTG1IPP53801 180 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 CYCSP99999 105 aaKnown RBP6.76□□□□□ -1.33
VPS41-201ENST00000265745 CD300CQ08708 224 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 CLINT1Q14677 625 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 LRRC37A5PQ49AS3 106 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 C9orf47Q6ZRZ4 202 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 SSX7Q7RTT5 188 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 C11orf72Q8NBR9 251 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 RXFP4Q8TDU9 374 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 BLNKQ8WV28 456 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 GNPNAT1Q96EK6 184 aaPredicted RBP6.76□□□□□ -1.33
VPS41-201ENST00000265745 LINC00467Q9BRT7 94 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 GSN-AS1Q9NRJ2 163 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 OR5AC2Q9NZP5 309 aa6.76□□□□□ -1.33
VPS41-201ENST00000265745 DYNC1H1Q14204 4646 aaKnown RBP6.76□□□□□ -1.33
VPS41-201ENST00000265745 A0A0J9YY99 117 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 C9orf118A6NHY6 69 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 INMT-MINDY4F8WBC2 141 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 H3BNG1 76 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 PRAF2O60831 178 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 NMBP08949 121 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 CRISP2P16562 243 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 RNASE4P34096 147 aaKnown RBP6.75□□□□□ -1.33
VPS41-201ENST00000265745 H2BFSP57053 126 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 ICAM4Q14773 271 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 ANXA2RQ3ZCQ2 193 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 Q6ZTI0 123 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 MIR17HGQ75NE6 70 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 C6orf223Q8N319 242 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 ZFAND2AQ8N6M9 145 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 C18orf15Q96N68 181 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 VGLL1Q99990 258 aa6.75□□□□□ -1.33
VPS41-201ENST00000265745 WDR61Q9GZS3 305 aaKnown RBP6.75□□□□□ -1.33
VPS41-201ENST00000265745 OR51M1Q9H341 326 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms