RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 AJUBAQ96IF1 538 aa11.64□□□□□ -0.55
PTPRA-201ENST00000216877 HHLA3Q9XRX5 114 aa11.64□□□□□ -0.55
PTPRA-201ENST00000216877 GAS8-AS1O95177 125 aa11.63□□□□□ -0.55
PTPRA-201ENST00000216877 COX6A1P12074 109 aa11.63□□□□□ -0.55
PTPRA-201ENST00000216877 UBTD1Q9HAC8 227 aa11.63□□□□□ -0.55
PTPRA-201ENST00000216877 RAB9BQ9NP90 201 aa11.63□□□□□ -0.55
PTPRA-201ENST00000216877 RAX2Q96IS3 184 aa11.63□□□□□ -0.55
PTPRA-201ENST00000216877 EFNA4P52798 201 aa11.63□□□□□ -0.55
PTPRA-201ENST00000216877 WI2-2373I1.2A0A1W2PRP0 233 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 MOGAT3Q86VF5 341 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 RAXQ9Y2V3 346 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 PIEZO1Q92508 2521 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 SPRY3O43610 288 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 FOXC1Q12948 553 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 S4R3C0 116 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 ZNF815PA8K554 130 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 WT1-ASQ06250 92 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 LYRM7Q5U5X0 104 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 Q6ZQT7 251 aa11.62□□□□□ -0.55
PTPRA-201ENST00000216877 CRLF1O75462 422 aa11.61□□□□□ -0.55
PTPRA-201ENST00000216877 SPTBN4Q9H254 2564 aa11.61□□□□□ -0.55
PTPRA-201ENST00000216877 NHLRC4P0CG21 123 aaPredicted RBP11.61□□□□□ -0.55
PTPRA-201ENST00000216877 IMMP1LQ96LU5 166 aa11.61□□□□□ -0.55
PTPRA-201ENST00000216877 C17orf82Q86X59 251 aaPredicted RBP11.61□□□□□ -0.55
PTPRA-201ENST00000216877 TMEM75Q8N9X5 138 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 MRPL20Q9BYC9 149 aaKnown RBP11.6□□□□□ -0.55
PTPRA-201ENST00000216877 OTORQ9NRC9 128 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 ATP5LO75964 103 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 DUX4L9Q6RFH8 374 aaPredicted RBP11.6□□□□□ -0.55
PTPRA-201ENST00000216877 C8orf46Q8TAG6 207 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 Q8TAT8 98 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 SPRY4Q9C004 299 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 CFAP47Q6ZTR5 3102 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 MORN3Q6PF18 240 aaPredicted RBP11.6□□□□□ -0.55
PTPRA-201ENST00000216877 C11orf53Q8IXP5 236 aa11.6□□□□□ -0.55
PTPRA-201ENST00000216877 IGHV4-39P01824 125 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 TNFRSF18Q9Y5U5 241 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 IGKV1D-17A0A075B6S4 117 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 MYMXA0A1B0GTQ4 84 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 TCL1BO95988 128 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 C15orf53Q8NAA6 179 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 NTN5Q8WTR8 489 aaPredicted RBP11.59□□□□□ -0.55
PTPRA-201ENST00000216877 ZNF71Q9NQZ8 489 aaPredicted RBP11.59□□□□□ -0.55
PTPRA-201ENST00000216877 TNFRSF6BO95407 300 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 MYCNOSP40205 109 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 TMEM78Q5T7P6 136 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 RUSC1-AS1Q66K80 236 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 RASL11BQ9BPW5 248 aa11.59□□□□□ -0.55
PTPRA-201ENST00000216877 PF4V1P10720 104 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 IGFL4Q6B9Z1 124 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 IGKV1D-37A0A075B6S9 117 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 SH2D1AO60880 128 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 CD40P25942 277 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 KLHL30-AS1Q8NEE0 82 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 CCL13Q99616 98 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 TMEM133Q9H2Q1 129 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 VCX2Q9H322 139 aa11.58□□□□□ -0.56
PTPRA-201ENST00000216877 SS18L1O75177 396 aaPredicted RBP11.57□□□□□ -0.56
PTPRA-201ENST00000216877 MRPL14Q6P1L8 145 aaKnown RBP11.57□□□□□ -0.56
PTPRA-201ENST00000216877 ATP6V0E2Q8NHE4 81 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 CHD8Q9HCK8 2581 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 FAM208BQ5VWN6 2430 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 IGKV2-40A0A087WW87 121 aaPredicted RBP11.57□□□□□ -0.56
PTPRA-201ENST00000216877 TRAV26-2A0A0B4J265 109 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 J3KRW8 73 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 IGKV2D-40P01614 121 aaPredicted RBP11.57□□□□□ -0.56
PTPRA-201ENST00000216877 CRIP1P50238 77 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 IQCF6A8MYZ5 107 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 RHODO00212 210 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 SLC25A20O43772 301 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 FCN3O75636 299 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 MEOX1P50221 254 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 PRB3Q04118 309 aaPredicted RBP11.57□□□□□ -0.56
PTPRA-201ENST00000216877 CHCHD5Q9BSY4 110 aa11.57□□□□□ -0.56
PTPRA-201ENST00000216877 OR11H6Q8NGC7 330 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 NOTCH2Q04721 2471 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 TAL2Q16559 108 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 DSPP15924 2871 aaKnown RBP11.56□□□□□ -0.56
PTPRA-201ENST00000216877 TRAV8-4A0A0B4J246 113 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 WISP2O76076 250 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 GP9P14770 177 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 SLC25A16P16260 332 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 FAM90A1Q86YD7 464 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 VPREB3Q9UKI3 123 aa11.56□□□□□ -0.56
PTPRA-201ENST00000216877 GLRXP35754 106 aa11.55□□□□□ -0.56
PTPRA-201ENST00000216877 SRSF1Q07955 248 aaKnown RBP eCLIP11.55□□□□□ -0.56
PTPRA-201ENST00000216877 PLGLAQ15195 96 aa11.55□□□□□ -0.56
PTPRA-201ENST00000216877 TRPT1Q86TN4 253 aaKnown RBP11.55□□□□□ -0.56
PTPRA-201ENST00000216877 SLC25A39Q9BZJ4 359 aaPredicted RBP11.55□□□□□ -0.56
PTPRA-201ENST00000216877 NXT2Q9NPJ8 142 aaKnown RBP11.55□□□□□ -0.56
PTPRA-201ENST00000216877 NDUFA4L2Q9NRX3 87 aa11.55□□□□□ -0.56
PTPRA-201ENST00000216877 IGHV3OR16-8A0A075B7F1 116 aa11.55□□□□□ -0.56
PTPRA-201ENST00000216877 TPSG1Q9NRR2 321 aa11.55□□□□□ -0.56
PTPRA-201ENST00000216877 LAMA5O15230 3695 aa11.55□□□□□ -0.56
PTPRA-201ENST00000216877 PRR7Q8TB68 274 aa11.54□□□□□ -0.56
PTPRA-201ENST00000216877 IGKV3D-15A0A087WSY6 115 aa11.54□□□□□ -0.56
PTPRA-201ENST00000216877 ZNF56Q15929 161 aa11.54□□□□□ -0.56
PTPRA-201ENST00000216877 PSMG4Q5JS54 123 aa11.54□□□□□ -0.56
PTPRA-201ENST00000216877 FAM216BQ8N7L0 139 aa11.54□□□□□ -0.56
PTPRA-201ENST00000216877 PRADC1Q9BSG0 188 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms