RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MBD6Q96DN6 1003 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 NDUFAF3Q9BU61 184 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 FUT9Q9Y231 359 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 SRRM4A7MD48 611 aaKnown RBP4.06□□□□□ -1.76
SCN1A-218ENST00000640036 SPINK4O60575 86 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 ZNF497Q6ZNH5 498 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 NEGR1Q7Z3B1 354 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 ANKRD29Q8N6D5 301 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 WFDC12Q8WWY7 111 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 RNF185Q96GF1 192 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 ST6GAL2Q96JF0 529 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 DSCR8Q96T75 97 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 LIME1Q9H400 295 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 IGKV2D-24A0A075B6R9 120 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 PPIFP30405 207 aaKnown RBP4.06□□□□□ -1.76
SCN1A-218ENST00000640036 LYZL2Q7Z4W2 148 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 FLG2Q5D862 2391 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-218ENST00000640036 TRBV20-1A0A075B6N2 111 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 C14orf177Q52M58 125 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 AWAT1Q58HT5 328 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 IGF2BP2-AS1Q96M15 143 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 NABP2Q9BQ15 211 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 ODF1Q14990 250 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 IMMP2LQ96T52 175 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 TMEM126AQ9H061 195 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 UTF1Q5T230 341 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 WIPF2Q8TF74 440 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-218ENST00000640036 SNHG12Q9BXW3 62 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 IGLV1-44P01699 117 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 FGF8P55075 233 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 LINC01545Q5VT33 79 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 PRR15LQ9BU68 103 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 TRAV24A0A0B4J272 114 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 PDE6HQ13956 83 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 MRPL23Q16540 153 aaKnown RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 TMEM222Q9H0R3 208 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 KAAG1Q9UBP8 84 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 TRAV12-3A0A0B4J271 114 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 PFN1P07737 140 aaKnown RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 NHLRC4P0CG21 123 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 PSG3Q16557 428 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 OR52E5Q8NH55 327 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 AMELYQ99218 206 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ERG28Q9UKR5 140 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 SELENOKQ9Y6D0 94 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 SOCS3O14543 225 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 MDKP21741 143 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 NDPQ00604 133 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 FGFBP3Q8TAT2 258 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 NPDC1Q9NQX5 325 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 SETXQ7Z333 2677 aaKnown RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 KIR2DL5BA0A0G2JN68 375 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 KIR2DL5BA0A0G2JPC4 375 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 NDUFA4O00483 81 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 PEX7O00628 323 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 GATA2P23769 480 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ATP5L2Q7Z4Y8 100 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 KIR2DL5AQ8N109 375 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 RFNGQ9Y644 331 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 GAGE12BA1L429 117 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 SPRY2O43597 315 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 GAGE7O76087 117 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 GAGE12FP0CL80 117 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 GAGE12GP0CL81 117 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 GAGE12IP0CL82 117 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ARL14EPLP0DKL9 152 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 RASL10AQ92737 203 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ST20Q9HBF5 79 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 C19orf84I3L1E1 186 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 RHODO00212 210 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 IGHV2-70P01814 119 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ATP5G1P05496 136 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ATP5G3P48201 142 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 MIC13Q5XKP0 118 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-218ENST00000640036 TSKUQ8WUA8 353 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 ISOC2Q96AB3 205 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 HSPB9Q9BQS6 159 aa4.05□□□□□ -1.76
SCN1A-218ENST00000640036 IGLV3-9A0A075B6K5 115 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 NDUFB1O75438 58 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 HIST1H4AP62805 103 aaKnown RBP4.04□□□□□ -1.76
SCN1A-218ENST00000640036 OTORQ9NRC9 128 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 TMEM160Q9NX00 188 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 H3BQ15 152 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 H3BTX0 84 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 CHCHD1Q96BP2 118 aaKnown RBP4.04□□□□□ -1.76
SCN1A-218ENST00000640036 PRR25Q96S07 402 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 LAMTOR2Q9Y2Q5 125 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 IGKV1OR2-108A0A075B7D4 117 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 TRAV25A0A0B4J276 109 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 WISP3O95389 354 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-218ENST00000640036 CFHR3Q02985 330 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 DEFB136Q30KP8 78 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 GAGE13Q4V321 117 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 C1orf100Q5SVJ3 147 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 DMRT1Q9Y5R6 373 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 ICOSQ9Y6W8 199 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 ATG2AQ2TAZ0 1938 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 IGKV1D-43A0A0B4J1Z2 117 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 CENPVL3A0A0U1RRI6 287 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms