RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PRELID3AQ96N28 172 aa15.75■□□□□ 0.11
SYNGAP1-227ENST00000638142 KALRNO60229 2985 aa15.75■□□□□ 0.11
SYNGAP1-227ENST00000638142 TRAV8-6A0A0B4J262 113 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 TMEM213A2RRL7 107 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 F8W735 103 aaPredicted RBP15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 RPL7P18124 248 aaKnown RBP15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 ZNF562Q6V9R5 426 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 ODF3BA8MYP8 253 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 FAM106CPP0CH98 169 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 HES1Q14469 280 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 FAM106AQ4KMX7 169 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 AMN1Q8IY45 258 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 ARPC1AQ92747 370 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 C21orf62Q9NYP8 219 aa15.74■□□□□ 0.11
SYNGAP1-227ENST00000638142 TMSB15BA0A087X1C1 80 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 M0R1W7 72 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 ZZEF1O43149 2961 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 TMEM97Q5BJF2 176 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 TTC9CQ8N5M4 171 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 LOXL1Q08397 574 aaPredicted RBP15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 IGFBPL1Q8WX77 278 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 PRR25Q96S07 402 aa15.73■□□□□ 0.11
SYNGAP1-227ENST00000638142 LOC389332A0A1B0GUA5 103 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 C7orf71A4D174 169 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 FGF6P10767 208 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 LGALS9BQ3B8N2 356 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 LGALS9CQ6DKI2 356 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 OR8A1Q8NGG7 326 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 VPS25Q9BRG1 176 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 THYN1Q9P016 225 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 DMXL2Q8TDJ6 3036 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 IGKV2-40A0A087WW87 121 aaPredicted RBP15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 GAGE12BA1L429 117 aa15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 IGKV2D-40P01614 121 aaPredicted RBP15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 MRPL51Q4U2R6 128 aaKnown RBP15.72■□□□□ 0.11
SYNGAP1-227ENST00000638142 SCGB2A1O75556 95 aa15.71■□□□□ 0.11
SYNGAP1-227ENST00000638142 PRTN3P24158 256 aa15.71■□□□□ 0.11
SYNGAP1-227ENST00000638142 KLRD1Q13241 179 aa15.71■□□□□ 0.11
SYNGAP1-227ENST00000638142 FOXE3Q13461 319 aa15.71■□□□□ 0.11
SYNGAP1-227ENST00000638142 OR1N2Q8NGR9 330 aa15.71■□□□□ 0.11
SYNGAP1-227ENST00000638142 TPRP12270 2363 aaKnown RBP15.71■□□□□ 0.11
SYNGAP1-227ENST00000638142 SMIM15Q7Z3B0 74 aa15.71■□□□□ 0.1
SYNGAP1-227ENST00000638142 TIMD4Q96H15 378 aa15.71■□□□□ 0.1
SYNGAP1-227ENST00000638142 ATMQ13315 3056 aa15.7■□□□□ 0.1
SYNGAP1-227ENST00000638142 HBDP02042 147 aa15.7■□□□□ 0.1
SYNGAP1-227ENST00000638142 BMI1P35226 326 aa15.7■□□□□ 0.1
SYNGAP1-227ENST00000638142 NHLH1Q02575 133 aa15.7■□□□□ 0.1
SYNGAP1-227ENST00000638142 FBXL19-AS1Q494R0 122 aa15.7■□□□□ 0.1
SYNGAP1-227ENST00000638142 EGR2P11161 476 aaPredicted RBP15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 NDPQ00604 133 aa15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 CCDC144NLQ6NUI1 221 aa15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 FER1L6-AS1Q8NA97 138 aa15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 K7ERU9 68 aa15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 PAX8Q06710 450 aa15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 PIP4P2Q8N4L2 257 aa15.69■□□□□ 0.1
SYNGAP1-227ENST00000638142 GVINP1Q7Z2Y8 2422 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 SNAI2O43623 268 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 RABAC1Q9UI14 185 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 FAM90A27PA6NNH2 459 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 IGLC6P0CF74 106 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 S100A7P31151 101 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 CKS2P33552 79 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 SRSF2Q01130 221 aaKnown RBP15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 BOD1L2Q8IYS8 172 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 PIEZO2Q9H5I5 2752 aa15.68■□□□□ 0.1
SYNGAP1-227ENST00000638142 NCBP2LA6PVI3 153 aaKnown RBP15.67■□□□□ 0.1
SYNGAP1-227ENST00000638142 H3BRM9 83 aa15.67■□□□□ 0.1
SYNGAP1-227ENST00000638142 LY6HO94772 140 aa15.67■□□□□ 0.1
SYNGAP1-227ENST00000638142 TWIST1Q15672 202 aa15.67■□□□□ 0.1
SYNGAP1-227ENST00000638142 Q8N6K4 173 aa15.67■□□□□ 0.1
SYNGAP1-227ENST00000638142 NPFFR1Q9GZQ6 430 aa15.67■□□□□ 0.1
SYNGAP1-227ENST00000638142 A6NDN8 102 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 GAGE10A6NGK3 116 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 OOSP1A8MZH6 123 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 CTSGP08311 255 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 GRNP28799 593 aaKnown RBP15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 CACNG7P62955 275 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 UFSP1Q6NVU6 142 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 SMAD5-AS1Q9Y6J3 95 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 DCHS1Q96JQ0 3298 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 A0A1W2PRD5 423 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 A0A1W2PRF3 423 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 A0A1W2PRM7 423 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 IGHV3-23P01764 117 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 ZNF80P51504 273 aaPredicted RBP15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 Q8TAT8 98 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 IFI27L1Q96BM0 104 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 VGLL1Q99990 258 aa15.66■□□□□ 0.1
SYNGAP1-227ENST00000638142 C9orf118A6NHY6 69 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 NPYP01303 97 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 GTF2H5Q6ZYL4 71 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 OR9G4Q8NGQ1 327 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 SIVA1O15304 175 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 IGHG4P01861 327 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 EBI3Q14213 229 aa15.65■□□□□ 0.1
SYNGAP1-227ENST00000638142 HSD52Q0P140 79 aa15.64■□□□□ 0.09
SYNGAP1-227ENST00000638142 C1orf122Q6ZSJ8 110 aa15.64■□□□□ 0.09
SYNGAP1-227ENST00000638142 VMO1Q7Z5L0 202 aa15.64■□□□□ 0.09
SYNGAP1-227ENST00000638142 CNFNQ9BYD5 112 aa15.64■□□□□ 0.09
SYNGAP1-227ENST00000638142 SMAD7O15105 426 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms