RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 OR10J3Q5JRS4 329 aa14.25□□□□□ -0.13
CLN3-263ENST00000637871 EXOC3-AS1Q8N2X6 119 aa14.25□□□□□ -0.13
CLN3-263ENST00000637871 S4R3C0 116 aa14.25□□□□□ -0.13
CLN3-263ENST00000637871 A0A087X0K7 114 aa14.24□□□□□ -0.13
CLN3-263ENST00000637871 PCP4L1A6NKN8 68 aa14.24□□□□□ -0.13
CLN3-263ENST00000637871 IGLV2-11P01706 119 aa14.24□□□□□ -0.13
CLN3-263ENST00000637871 SNRPCP09234 159 aaKnown RBP14.24□□□□□ -0.13
CLN3-263ENST00000637871 PRR27Q6MZM9 219 aa14.24□□□□□ -0.13
CLN3-263ENST00000637871 NUP35Q8NFH5 326 aa14.24□□□□□ -0.13
CLN3-263ENST00000637871 USMG5Q96IX5 58 aa14.24□□□□□ -0.13
CLN3-263ENST00000637871 H3BTX0 84 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 IGHG2P01859 326 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 GPR183P32249 361 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 JOSD1Q15040 202 aaPredicted RBP14.23□□□□□ -0.13
CLN3-263ENST00000637871 TOMM20LQ6UXN7 152 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 OR5R1Q8NH85 324 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 CLEC5AQ9NY25 188 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 PSG8Q9UQ74 426 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 SRD5A1P18405 259 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 TCL1AP56279 114 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 FAM209BQ5JX69 171 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 SAPCD1Q5SSQ6 148 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 COX8CQ7Z4L0 72 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 PRNTQ86SH4 94 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 LURAP1LQ8IV03 231 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 NEU1Q99519 415 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 ZFAND3Q9H8U3 227 aa14.23□□□□□ -0.13
CLN3-263ENST00000637871 NF1P21359 2839 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 G3V318 75 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 IGHV3-23P01764 117 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 APCSP02743 223 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 FOXA3P55318 350 aaPredicted RBP14.22□□□□□ -0.13
CLN3-263ENST00000637871 C16orf54Q6UWD8 224 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 C17orf77Q96MU5 243 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 SLC50A1Q9BRV3 221 aa14.22□□□□□ -0.13
CLN3-263ENST00000637871 HIGD1CA8MV81 97 aa14.21□□□□□ -0.13
CLN3-263ENST00000637871 CRLF1O75462 422 aa14.21□□□□□ -0.13
CLN3-263ENST00000637871 RAB4BP61018 213 aa14.21□□□□□ -0.13
CLN3-263ENST00000637871 Q6AWC8 147 aa14.21□□□□□ -0.13
CLN3-263ENST00000637871 RBPMS2Q6ZRY4 209 aaKnown RBP14.21□□□□□ -0.13
CLN3-263ENST00000637871 CCDC140Q96MF4 163 aa14.21□□□□□ -0.13
CLN3-263ENST00000637871 METTL26Q96S19 204 aa14.21□□□□□ -0.13
CLN3-263ENST00000637871 BUB3O43684 328 aa14.2□□□□□ -0.14
CLN3-263ENST00000637871 CT45A10P0DMU9 189 aa14.2□□□□□ -0.14
CLN3-263ENST00000637871 TPPP2P59282 170 aa14.2□□□□□ -0.14
CLN3-263ENST00000637871 MRPL54Q6P161 138 aaKnown RBP14.2□□□□□ -0.14
CLN3-263ENST00000637871 CLEC19AQ6UXS0 136 aa14.2□□□□□ -0.14
CLN3-263ENST00000637871 TMEM219Q86XT9 240 aa14.2□□□□□ -0.14
CLN3-263ENST00000637871 GSN-AS1Q9NRJ2 163 aa14.2□□□□□ -0.14
CLN3-263ENST00000637871 SETD2Q9BYW2 2564 aaPredicted RBP14.2□□□□□ -0.14
CLN3-263ENST00000637871 A0A1B0GW15 77 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 FAM162BQ5T6X4 162 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 BAGE3Q86Y29 109 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 A0A1B0GXF2 115 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 LINC01548A6NM66 108 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 H3BUX3 64 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 DEFB112Q30KQ8 113 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 MRPL53Q96EL3 112 aaKnown RBP14.19□□□□□ -0.14
CLN3-263ENST00000637871 SGK494Q96LW2 274 aa14.19□□□□□ -0.14
CLN3-263ENST00000637871 A0A0G2JLM5 398 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 RBAKDNA6NC62 111 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 ZNF785A8K8V0 405 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 CA1P00915 261 aaPredicted RBP14.18□□□□□ -0.14
CLN3-263ENST00000637871 TRGV3P03979 118 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 HBBP68871 147 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 GNB4Q9HAV0 340 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 U3KQE9 123 aa14.18□□□□□ -0.14
CLN3-263ENST00000637871 SPINK4O60575 86 aa14.17□□□□□ -0.14
CLN3-263ENST00000637871 C9orf152Q5JTZ5 239 aa14.17□□□□□ -0.14
CLN3-263ENST00000637871 LINC00322Q6ZN03 302 aaPredicted RBP14.17□□□□□ -0.14
CLN3-263ENST00000637871 TEX29Q8N6K0 151 aa14.17□□□□□ -0.14
CLN3-263ENST00000637871 SIGLECL1Q8N7X8 197 aa14.17□□□□□ -0.14
CLN3-263ENST00000637871 TRAV8-1A0A0A6YYK1 113 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 A8MWP6 167 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 PPIFP30405 207 aaKnown RBP14.16□□□□□ -0.14
CLN3-263ENST00000637871 DMRTA1Q5VZB9 504 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 C9orf139Q6ZV77 190 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 OR2D3Q8NGH3 330 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 MS4A10Q96PG2 267 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 SMAD5-AS1Q9Y6J3 95 aa14.16□□□□□ -0.14
CLN3-263ENST00000637871 BMI1P35226 326 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 RPS20P60866 119 aaKnown RBP14.15□□□□□ -0.14
CLN3-263ENST00000637871 SLC35B1P78383 322 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 SRSF2Q01130 221 aaKnown RBP14.15□□□□□ -0.14
CLN3-263ENST00000637871 TMEM256Q8N2U0 113 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 NDFIP1Q9BT67 221 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 TMEM89A2RUT3 159 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 HAX1O00165 279 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 NDUFA4O00483 81 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 KLF5Q13887 457 aaPredicted RBP14.15□□□□□ -0.14
CLN3-263ENST00000637871 IQCJQ1A5X6 159 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 ZC2HC1AQ96GY0 325 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 DUX5Q96PT3 197 aa14.15□□□□□ -0.14
CLN3-263ENST00000637871 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.14□□□□□ -0.15
CLN3-263ENST00000637871 CLPSL1A2RUU4 121 aa14.14□□□□□ -0.15
CLN3-263ENST00000637871 GRIFINA4D1Z8 144 aa14.14□□□□□ -0.15
CLN3-263ENST00000637871 SH2D7A6NKC9 451 aaPredicted RBP14.14□□□□□ -0.15
CLN3-263ENST00000637871 M0R3E3 92 aa14.14□□□□□ -0.15
CLN3-263ENST00000637871 CHEK1O14757 476 aa14.14□□□□□ -0.15
CLN3-263ENST00000637871 FRMD6-AS1P0C7T7 363 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms