RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 A0A1B0GUS0 222 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 ID1P41134 155 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 NSUN5P1Q3KNT7 163 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 H0Y8G0 127 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 IL36BQ9NZH7 164 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 ARL2-SNX15V9GYD0 113 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 TRBV24-1A0A075B6N3 115 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 ERCC8Q13216 396 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 SMIM15Q7Z3B0 74 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 NUDT10Q8NFP7 164 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 NUDT11Q96G61 164 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 TMEM242Q9NWH2 141 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 F8P00451 2351 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 ZNF688P0C7X2 276 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 EGR2P11161 476 aaPredicted RBP12.22□□□□□ -0.45
CPSF1-213ENST00000620219 SMR3AQ99954 134 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 ITPR2Q14571 2701 aa12.22□□□□□ -0.45
CPSF1-213ENST00000620219 CRISP2P16562 243 aa12.21□□□□□ -0.45
CPSF1-213ENST00000620219 PPIFP30405 207 aaKnown RBP12.21□□□□□ -0.45
CPSF1-213ENST00000620219 MEOX2P50222 304 aa12.21□□□□□ -0.45
CPSF1-213ENST00000620219 MRPL18Q9H0U6 180 aaKnown RBP12.21□□□□□ -0.45
CPSF1-213ENST00000620219 UFC1Q9Y3C8 167 aa12.21□□□□□ -0.45
CPSF1-213ENST00000620219 LCN12Q6JVE5 192 aa12.21□□□□□ -0.45
CPSF1-213ENST00000620219 TEX15Q9BXT5 2789 aa12.21□□□□□ -0.45
CPSF1-213ENST00000620219 HIGD1CA8MV81 97 aa12.21□□□□□ -0.46
CPSF1-213ENST00000620219 ZNF253O75346 499 aa12.21□□□□□ -0.46
CPSF1-213ENST00000620219 FOLR2P14207 255 aa12.21□□□□□ -0.46
CPSF1-213ENST00000620219 PMCHP20382 165 aa12.21□□□□□ -0.46
CPSF1-213ENST00000620219 GPX1P07203 203 aa12.2□□□□□ -0.46
CPSF1-213ENST00000620219 FRMD6-AS1P0C7T7 363 aa12.2□□□□□ -0.46
CPSF1-213ENST00000620219 GP9P14770 177 aa12.2□□□□□ -0.46
CPSF1-213ENST00000620219 CCDC140Q96MF4 163 aa12.2□□□□□ -0.46
CPSF1-213ENST00000620219 NEU1Q99519 415 aa12.2□□□□□ -0.46
CPSF1-213ENST00000620219 SSBP4Q9BWG4 385 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-213ENST00000620219 MRPL27Q9P0M9 148 aaKnown RBP12.2□□□□□ -0.46
CPSF1-213ENST00000620219 C5orf52A6NGY3 159 aa12.2□□□□□ -0.46
CPSF1-213ENST00000620219 APOHP02749 345 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-213ENST00000620219 DAZ1Q9NQZ3 744 aaKnown RBP12.2□□□□□ -0.46
CPSF1-213ENST00000620219 C9JCJ5 164 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 UNQ9165/PRO28630Q6UXU0 137 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 TCEAL7Q9BRU2 100 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 SCGB1D1O95968 90 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 EBLN2Q6P2I7 272 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 AJUBAQ96IF1 538 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 SRSF2Q01130 221 aaKnown RBP12.19□□□□□ -0.46
CPSF1-213ENST00000620219 PIFOQ8TCI5 191 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 ZNF414Q96IQ9 312 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 PSMG3-AS1Q96PY0 264 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 TMEM208Q9BTX3 173 aa12.19□□□□□ -0.46
CPSF1-213ENST00000620219 POLR3KQ9Y2Y1 108 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-213ENST00000620219 PACRGQ96M98 296 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-213ENST00000620219 PSMG4Q5JS54 123 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 SAPCD1Q5SSQ6 148 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 LINC00518Q8N0U6 118 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 SLC50A1Q9BRV3 221 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 RPP21Q9H633 154 aaKnown RBP12.18□□□□□ -0.46
CPSF1-213ENST00000620219 S100A8P05109 93 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 FOXA3P55318 350 aaPredicted RBP12.18□□□□□ -0.46
CPSF1-213ENST00000620219 C11orf52Q96A22 123 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 APCSP02743 223 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 WDR73Q6P4I2 378 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 OR11H1Q8NG94 326 aa12.18□□□□□ -0.46
CPSF1-213ENST00000620219 TMEM183BQ1AE95 376 aa12.17□□□□□ -0.46
CPSF1-213ENST00000620219 RNASEKQ6P5S7 137 aaKnown RBP12.17□□□□□ -0.46
CPSF1-213ENST00000620219 SNRPD3P62318 126 aaKnown RBP12.17□□□□□ -0.46
CPSF1-213ENST00000620219 TWIST1Q15672 202 aa12.17□□□□□ -0.46
CPSF1-213ENST00000620219 OSTCQ9NRP0 149 aa12.17□□□□□ -0.46
CPSF1-213ENST00000620219 GCN1Q92616 2671 aaKnown RBP12.17□□□□□ -0.46
CPSF1-213ENST00000620219 IGHV3OR16-12A0A075B7B8 117 aa12.17□□□□□ -0.46
CPSF1-213ENST00000620219 HSBP1O75506 76 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 DEFB1P60022 68 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 PRSS57Q6UWY2 283 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 C8orf49Q96NF6 230 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 CD99P14209 185 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 CDX1P47902 265 aaPredicted RBP12.16□□□□□ -0.46
CPSF1-213ENST00000620219 C8orf86Q6ZUL3 223 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 PF4P02776 101 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 PSG3Q16557 428 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 Q86TA4 180 aa12.16□□□□□ -0.46
CPSF1-213ENST00000620219 SRIP30626 198 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 PLP1P60201 277 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 SPANXN1Q5VSR9 72 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 VGLL1Q99990 258 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 RIGQ13278 110 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 TEP1Q99973 2627 aaKnown RBP12.15□□□□□ -0.46
CPSF1-213ENST00000620219 WI2-2373I1.2A0A1W2PRP0 233 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 DIRC3C9JPN6 131 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 NDUFA4O00483 81 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 PHOX2AO14813 284 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 RNASE4P34096 147 aaKnown RBP12.15□□□□□ -0.46
CPSF1-213ENST00000620219 Q6YL49 198 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 TMEM14CQ9P0S9 112 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 V9GYV3 84 aa12.15□□□□□ -0.46
CPSF1-213ENST00000620219 S100A12P80511 92 aa12.15□□□□□ -0.47
CPSF1-213ENST00000620219 TMEM18Q96B42 140 aa12.15□□□□□ -0.47
CPSF1-213ENST00000620219 F6UB75 175 aa12.14□□□□□ -0.47
CPSF1-213ENST00000620219 BUB3O43684 328 aa12.14□□□□□ -0.47
CPSF1-213ENST00000620219 HOXA5P20719 270 aa12.14□□□□□ -0.47
CPSF1-213ENST00000620219 ZFP30Q9Y2G7 519 aa12.14□□□□□ -0.47
CPSF1-213ENST00000620219 PRO1933Q9H354 126 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms