RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 IGLV2-8P01709 118 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 CSN3P07498 182 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 TAS2R60P59551 318 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 CENPWQ5EE01 88 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 NDUFA11Q86Y39 141 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 RNF182Q8N6D2 247 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 ARL6IP6Q8N6S5 226 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 OCC1Q8TAD7 63 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 NRN1Q9NPD7 142 aa10.77□□□□□ -0.69
USP39-220ENST00000613444 BMI1P35226 326 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 CNN1P51911 297 aaKnown RBP10.76□□□□□ -0.69
USP39-220ENST00000613444 GOLT1AQ6ZVE7 132 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 SGK494Q96LW2 274 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 AURKAIP1Q9NWT8 199 aaPredicted RBP10.76□□□□□ -0.69
USP39-220ENST00000613444 PEMTQ9UBM1 199 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 FBN1P35555 2871 aaKnown RBP10.76□□□□□ -0.69
USP39-220ENST00000613444 TRAV8-1A0A0A6YYK1 113 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 ZNF705FA8MVS1 300 aaPredicted RBP10.76□□□□□ -0.69
USP39-220ENST00000613444 DCANP1Q8TF63 244 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 LY96Q9Y6Y9 160 aa10.76□□□□□ -0.69
USP39-220ENST00000613444 SORL1Q92673 2214 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 K7EN84 100 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 RHEBQ15382 184 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 ADIRFQ15847 76 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 NSUN5P1Q3KNT7 163 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 LCN12Q6JVE5 192 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 C20orf173Q96LM9 149 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 PRAC2D3DTV9 90 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 GNG4P50150 75 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 RPL11P62913 178 aaKnown RBP10.75□□□□□ -0.69
USP39-220ENST00000613444 MRPL53Q96EL3 112 aaKnown RBP10.75□□□□□ -0.69
USP39-220ENST00000613444 FMC1Q96HJ9 113 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 C16orf92Q96LL3 132 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 PRELID1Q9Y255 219 aa10.75□□□□□ -0.69
USP39-220ENST00000613444 IGKV3-7A0A075B6H7 116 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 KRTAP24-1Q3LI83 254 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 PRIMA1Q86XR5 153 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 TMEM75Q8N9X5 138 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 CITED1Q99966 193 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 RPS10P5Q9NQ39 176 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 VWFP04275 2813 aa10.74□□□□□ -0.69
USP39-220ENST00000613444 TRBV6-1A0A0K0K1D8 114 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 B4DEV8 164 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 LTAP01374 205 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 S100A9P06702 114 aaKnown RBP10.73□□□□□ -0.69
USP39-220ENST00000613444 CSN1S1P47710 185 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 PSG3Q16557 428 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 ISOC2Q96AB3 205 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 MLST8Q9BVC4 326 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 MS4A6AQ9H2W1 248 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 IGKV2-40A0A087WW87 121 aaPredicted RBP10.73□□□□□ -0.69
USP39-220ENST00000613444 SERTM2A0A1B0GWG4 89 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 IGKV2D-40P01614 121 aaPredicted RBP10.73□□□□□ -0.69
USP39-220ENST00000613444 UBE2G1P62253 170 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 Q86TA4 180 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 GBGT1Q8N5D6 347 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 CLEC5AQ9NY25 188 aa10.73□□□□□ -0.69
USP39-220ENST00000613444 A0A087WWC5 75 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 M0QZ24 198 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 DNASE2O00115 360 aaPredicted RBP10.72□□□□□ -0.69
USP39-220ENST00000613444 OVOL1O14753 267 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 TSPAN4O14817 238 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 BTN1A1Q13410 526 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 BAGE2Q86Y30 109 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 NHLRC2Q8NBF2 726 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 FLI1Q01543 452 aaPredicted RBP10.72□□□□□ -0.69
USP39-220ENST00000613444 RNF212Q495C1 297 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 TMEM88Q6PEY1 159 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 CBLN2Q8IUK8 224 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 VGLL1Q99990 258 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 SIGLEC8Q9NYZ4 499 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 PSG8Q9UQ74 426 aa10.72□□□□□ -0.69
USP39-220ENST00000613444 K7EQG2 157 aa10.71□□□□□ -0.69
USP39-220ENST00000613444 GCGP01275 180 aa10.71□□□□□ -0.69
USP39-220ENST00000613444 OR5I1Q13606 314 aa10.71□□□□□ -0.69
USP39-220ENST00000613444 DEFB114Q30KQ6 69 aa10.71□□□□□ -0.69
USP39-220ENST00000613444 FAM24BQ8N5W8 94 aa10.71□□□□□ -0.69
USP39-220ENST00000613444 RBAKDNA6NC62 111 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 K7EQM0 130 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 PRNTQ86SH4 94 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 SMIM12Q96EX1 92 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 ASCL2Q99929 193 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 TRRAPQ9Y4A5 3859 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 SAMD13Q5VXD3 122 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 WFDC3Q8IUB2 231 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 TMEM61Q8N0U2 210 aa10.7□□□□□ -0.7
USP39-220ENST00000613444 TMEM183AQ8IXX5 376 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 SFRP2Q96HF1 295 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 TMEM242Q9NWH2 141 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 TFPI2P48307 235 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 DEFB1P60022 68 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 ERCC8Q13216 396 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 CD300EQ496F6 205 aaPredicted RBP10.69□□□□□ -0.7
USP39-220ENST00000613444 ZNF738Q8NE65 137 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 ZFP30Q9Y2G7 519 aa10.69□□□□□ -0.7
USP39-220ENST00000613444 MT-ND4LP03901 98 aa10.68□□□□□ -0.7
USP39-220ENST00000613444 LINC00322Q6ZN03 302 aaPredicted RBP10.68□□□□□ -0.7
USP39-220ENST00000613444 C9orf47Q6ZRZ4 202 aa10.68□□□□□ -0.7
USP39-220ENST00000613444 LINC00482Q8N8I6 264 aa10.68□□□□□ -0.7
USP39-220ENST00000613444 DYNLRB2Q8TF09 96 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms