RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PARD6GQ9BYG4 376 aaPredicted RBP5.33□□□□□ -1.56
CUX1-219ENST00000606749 WDR83OSQ9Y284 106 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 LSM5Q9Y4Y9 91 aaKnown RBP5.33□□□□□ -1.56
CUX1-219ENST00000606749 PXMP4Q9Y6I8 212 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 HERC2O95714 4834 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 PKHD1P08F94 4074 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 FAT2Q9NYQ8 4349 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 NBDYA0A0U1RRE5 68 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 S100A11P31949 105 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 RPL29P47914 159 aaKnown RBP5.32□□□□□ -1.56
CUX1-219ENST00000606749 CAV2P51636 162 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 CCL18P55774 89 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 IL15RAQ13261 267 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 GUK1Q16774 197 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 VWC2Q2TAL6 325 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 GFI1BQ5VTD9 330 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 CCDC28AQ8IWP9 274 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 C12orf45Q8N5I9 185 aaPredicted RBP5.32□□□□□ -1.56
CUX1-219ENST00000606749 LINC00612Q8N6U2 182 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 OR1L4Q8NGR5 311 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 CHAC2Q8WUX2 184 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 RNF141Q8WVD5 230 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 SLC39A9Q9NUM3 307 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 NUDT15Q9NV35 164 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 UQCC1Q9NVA1 299 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 ZNF586Q9NXT0 402 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 LINC00588Q9Y4M8 146 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 DNAH2Q9P225 4427 aa5.32□□□□□ -1.56
CUX1-219ENST00000606749 TRAV12-3A0A0B4J271 114 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 H2AFB2P0C5Z0 115 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 PVALBP20472 110 aaPredicted RBP5.31□□□□□ -1.56
CUX1-219ENST00000606749 SULT1A1P50225 295 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 TNP2Q05952 138 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 OR5I1Q13606 314 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 CLINT1Q14677 625 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 ZNF575Q86XF7 245 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 TMEM252Q8N6L7 170 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 ODF3Q96PU9 254 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 PFDN5Q99471 154 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 LYRM2Q9NU23 88 aaPredicted RBP5.31□□□□□ -1.56
CUX1-219ENST00000606749 NDUFA13Q9P0J0 144 aa5.31□□□□□ -1.56
CUX1-219ENST00000606749 KIAA1109Q2LD37 5005 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 TRBV19A0A075B6N1 114 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 TRAV26-1A0A087WT03 109 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 UBE2L5PA0A1B0GUS4 154 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 IGSF23A1L1A6 192 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 GAGE12BA1L429 117 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 NPIPB6E9PJ23 425 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 J3KRW8 73 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 ZNF253O75346 499 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 GAGE7O76087 117 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 NDUFB4O95168 129 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 RLN2P04090 185 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 GAGE12FP0CL80 117 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 GAGE12GP0CL81 117 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 GAGE12IP0CL82 117 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 M6PRP20645 277 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 HOXA5P20719 270 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 LEPP41159 167 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 S100A10P60903 97 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 HBG1P69891 147 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 HBG2P69892 147 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 BAXQ07812 192 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 ERCC8Q13216 396 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 RAB32Q13637 225 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 ATP6V1FQ16864 119 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 SSX7Q7RTT5 188 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 C6orf223Q8N319 242 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 RXFP4Q8TDU9 374 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 GNPNAT1Q96EK6 184 aaPredicted RBP5.3□□□□□ -1.56
CUX1-219ENST00000606749 MRPL53Q96EL3 112 aaKnown RBP5.3□□□□□ -1.56
CUX1-219ENST00000606749 LINC00477Q96M19 166 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 PYGO2Q9BRQ0 406 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 CCDC32Q9BV29 185 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 Q9H8V8 135 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 TMEM14CQ9P0S9 112 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 DNAH17Q9UFH2 4485 aa5.3□□□□□ -1.56
CUX1-219ENST00000606749 MUC4Q99102 2169 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 PCLOQ9Y6V0 5065 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 A0A0J9YY99 117 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 FAM240BA0A1B0GVZ2 78 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 SNURFLB1AK76 121 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 M0R3E3 92 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 ZNF324O75467 553 aaPredicted RBP5.29□□□□□ -1.56
CUX1-219ENST00000606749 SLC25A5P05141 298 aaKnown RBP5.29□□□□□ -1.56
CUX1-219ENST00000606749 HIST1H1EP10412 219 aaKnown RBP5.29□□□□□ -1.56
CUX1-219ENST00000606749 FGF7P21781 194 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 DAZ2Q13117 558 aaKnown RBP5.29□□□□□ -1.56
CUX1-219ENST00000606749 ESRGQ1W209 222 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 STX12Q86Y82 276 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 ZNF503Q96F45 646 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 AGPAT4-IT1Q9H0P7 198 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 PRELID1Q9Y255 219 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 TIMM9Q9Y5J7 89 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 PKD1P98161 4303 aa5.29□□□□□ -1.56
CUX1-219ENST00000606749 C7orf71A4D174 169 aa5.28□□□□□ -1.56
CUX1-219ENST00000606749 KLLNB2CW77 178 aa5.28□□□□□ -1.56
CUX1-219ENST00000606749 H3BNG1 76 aa5.28□□□□□ -1.56
CUX1-219ENST00000606749 MPDU1O75352 247 aa5.28□□□□□ -1.56
CUX1-219ENST00000606749 PYYP10082 97 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms