RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 HLA-DQA1P01909 254 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 PSG9Q00887 426 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 RNF182Q8N6D2 247 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 OR2D3Q8NGH3 330 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 VGLL1Q99990 258 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 ZFP30Q9Y2G7 519 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 CREBBPQ92793 2442 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 FAM223BA6NKX1 122 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 K7EQM0 130 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 SRIP30626 198 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 C16orf54Q6UWD8 224 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 UNQ9165/PRO28630Q6UXU0 137 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 FAM223AQ8IWN6 122 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 Q8TAT8 98 aa11.13□□□□□ -0.63
VRK3-217ENST00000599538 WIPF2Q8TF74 440 aaPredicted RBP11.13□□□□□ -0.63
VRK3-217ENST00000599538 PRAC2D3DTV9 90 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 APCSP02743 223 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 CT83Q5H943 113 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 HIST2H2BCQ6DN03 193 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 TMEM18Q96B42 140 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 RCHY1Q96PM5 261 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 IGHV4-31P0DP07 118 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 PF4V1P10720 104 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 CD33P20138 364 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 ARL3P36405 182 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 CSN1S1P47710 185 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 DEFB113Q30KQ7 82 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 COX19Q49B96 90 aa11.12□□□□□ -0.63
VRK3-217ENST00000599538 LINC00587B1AMM8 73 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 RELQ04864 619 aaPredicted RBP11.11□□□□□ -0.63
VRK3-217ENST00000599538 LOXL1Q08397 574 aaPredicted RBP11.11□□□□□ -0.63
VRK3-217ENST00000599538 Q0VG73 95 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 JOSD1Q15040 202 aaPredicted RBP11.11□□□□□ -0.63
VRK3-217ENST00000599538 BAGE3Q86Y29 109 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 OR5R1Q8NH85 324 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 PRDM13Q9H4Q3 707 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 PRRC2AP48634 2157 aaKnown RBP11.11□□□□□ -0.63
VRK3-217ENST00000599538 TLN2Q9Y4G6 2542 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 M0QZK8 103 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 ERCC8Q13216 396 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 Q5PR19 223 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 LCN12Q6JVE5 192 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 C10orf99Q6UWK7 81 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 METTL26Q96S19 204 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 U3KQE9 123 aa11.11□□□□□ -0.63
VRK3-217ENST00000599538 ZNF253O75346 499 aa11.1□□□□□ -0.63
VRK3-217ENST00000599538 IQCJQ1A5X6 159 aa11.1□□□□□ -0.63
VRK3-217ENST00000599538 RASL11AQ6T310 242 aa11.1□□□□□ -0.63
VRK3-217ENST00000599538 RBPMS2Q6ZRY4 209 aaKnown RBP11.1□□□□□ -0.63
VRK3-217ENST00000599538 A0A087X0K7 114 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 ZNF80P51504 273 aaPredicted RBP11.09□□□□□ -0.63
VRK3-217ENST00000599538 PRR25Q96S07 402 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 GFRA4Q9GZZ7 299 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 TRAV8-2A0A0B4J237 113 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 SMAD7O15105 426 aaKnown RBP11.09□□□□□ -0.63
VRK3-217ENST00000599538 IGLV1-40P01703 118 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 ESDP10768 282 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 HBBP68871 147 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 CFHR3Q02985 330 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 ATP5L2Q7Z4Y8 100 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 KRTAP1-3Q8IUG1 177 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 OR4B1Q8NGF8 309 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 TMEM190Q8WZ59 177 aa11.09□□□□□ -0.63
VRK3-217ENST00000599538 RAB9AP51151 201 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 S100A12P80511 92 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 Q96MF0 132 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 SELENOKQ9Y6D0 94 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 TMSB15BA0A087X1C1 80 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.08□□□□□ -0.64
VRK3-217ENST00000599538 J3QLI3 93 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 SH2D1AO60880 128 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 C1orf194Q5T5A4 169 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 OR4X2Q8NGF9 303 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 C18orf32Q8TCD1 76 aa11.08□□□□□ -0.64
VRK3-217ENST00000599538 CCDC168Q8NDH2 2452 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 SERTM2A0A1B0GWG4 89 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 A8MWP6 167 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 FSHBP01225 129 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 ARMS2P0C7Q2 107 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 S100A7P31151 101 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 FOXA3P55318 350 aaPredicted RBP11.07□□□□□ -0.64
VRK3-217ENST00000599538 OR10J3Q5JRS4 329 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 C8orf86Q6ZUL3 223 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 Q6ZWC4 215 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 USMG5Q96IX5 58 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 ATP6V0BQ99437 205 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 BEX4Q9NWD9 120 aaPredicted RBP11.07□□□□□ -0.64
VRK3-217ENST00000599538 RNF114Q9Y508 228 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 ITPR3Q14573 2671 aa11.07□□□□□ -0.64
VRK3-217ENST00000599538 FAM231BA6NCW3 169 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 H3BUA1 57 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 BRI3O95415 125 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 CT45A10P0DMU9 189 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 CTAG1AP78358 180 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 ZNF575Q86XF7 245 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 GLMPQ8WWB7 406 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 ALKBH7Q9BT30 221 aaPredicted RBP11.06□□□□□ -0.64
VRK3-217ENST00000599538 A0A1W2PS18 150 aa11.06□□□□□ -0.64
VRK3-217ENST00000599538 EDN2P20800 178 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms