RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	GNPNAT1	Q96EK6	184 aa	Predicted RBP	7.32	□□□□□ -1.24
LSM4-205	ENST00000597776	KRTAP1-5	Q9BYS1	174 aa		7.32	□□□□□ -1.24
LSM4-205	ENST00000597776	RNF24	Q9Y225	148 aa		7.32	□□□□□ -1.24
LSM4-205	ENST00000597776	TRAV5	A0A0B4J249	113 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	TRAV12-3	A0A0B4J271	114 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	ZNF701	M0R085	212 aa	Predicted RBP	7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	CT45A10	P0DMU9	189 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	M6PR	P20645	277 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	C10orf113	Q5VZT2	155 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	CCDC28A	Q8IWP9	274 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	LINC00612	Q8N6U2	182 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	SAT2	Q96F10	170 aa	Predicted RBP	7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	C20orf144	Q9BQM9	153 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	GGACT	Q9BVM4	153 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776		Q9H8V8	135 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	PXMP4	Q9Y6I8	212 aa		7.31	□□□□□ -1.24
LSM4-205	ENST00000597776	CENPX	A8MT69	81 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776		L7N2F9	121 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	CDK2AP2	O75956	126 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	CST7	O76096	145 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	RLN2	P04090	185 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	IL7	P13232	177 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	CAMLG	P49069	296 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	VAMP2	P63027	116 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	MIC13	Q5XKP0	118 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	NRARP	Q7Z6K4	114 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	MAPKAPK5-AS1	Q8N8E1	139 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	RXFP4	Q8TDU9	374 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	C20orf85	Q9H1P6	137 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	TMPRSS5	Q9H3S3	457 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	LSM5	Q9Y4Y9	91 aa	Known RBP	7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	DNAH5	Q8TE73	4624 aa		7.3	□□□□□ -1.24
LSM4-205	ENST00000597776	FAM25E	A8MYX2	175 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	SNURFL	B1AK76	121 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	NPIPB6	E9PJ23	425 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	LEP	P41159	167 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	BCAP31	P51572	246 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	CAV2	P51636	162 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	ZNF846	Q147U1	533 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	ESRG	Q1W209	222 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776		Q6ZTI0	123 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	SPATA12	Q7Z6I5	190 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	DNAJC4	Q9NNZ3	241 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	ZNF586	Q9NXT0	402 aa		7.29	□□□□□ -1.24
LSM4-205	ENST00000597776	UBE2L5P	A0A1B0GUS4	154 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	FAM24A	A6NFZ4	105 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776		M0R3E3	92 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	PLA2G10	O15496	165 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	ERCC8	Q13216	396 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	RAB31	Q13636	194 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	TTC32	Q5I0X7	151 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776		Q6ZRG5	221 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	ZNF431	Q8TF32	576 aa	Predicted RBP	7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	ZNF503	Q96F45	646 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	ODF3	Q96PU9	254 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	SEC22C	Q9BRL7	303 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776		Q9H3A6	140 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	C11orf1	Q9H5F2	150 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	UQCC1	Q9NVA1	299 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	WDR83OS	Q9Y284	106 aa		7.28	□□□□□ -1.24
LSM4-205	ENST00000597776	TRAV6	A0A075B6T7	132 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	C5orf51	A6NDU8	294 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	KRTAP10-2	P60368	255 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	DAZ2	Q13117	558 aa	Known RBP	7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	BTN1A1	Q13410	526 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	GUK1	Q16774	197 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	OR1L4	Q8NGR5	311 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	PYGO2	Q9BRQ0	406 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	UPK3B	Q9BT76	320 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	GSN-AS1	Q9NRJ2	163 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	SLC39A9	Q9NUM3	307 aa		7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	MRPS16	Q9Y3D3	137 aa	Known RBP	7.27	□□□□□ -1.25
LSM4-205	ENST00000597776	TRBV19	A0A075B6N1	114 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	TRGV2	A0A075B6R0	118 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	IGSF23	A1L1A6	192 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	C7orf71	A4D174	169 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776		H3BNG1	76 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	LYRM1	O43325	122 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	NDUFB4	O95168	129 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	PYY	P10082	97 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	S100A10	P60903	97 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	BAX	Q07812	192 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	CD300C	Q08708	224 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	VWC2	Q2TAL6	325 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	C11orf72	Q8NBR9	251 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	VSIG2	Q96IQ7	327 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	PFDN5	Q99471	154 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776	NUDT15	Q9NV35	164 aa		7.26	□□□□□ -1.25
LSM4-205	ENST00000597776		A0A096LPF7	62 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	TRGV1	A0A0A0MS02	117 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	ZNF253	O75346	499 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	TCRB	P04435	133 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	SLC25A5	P05141	298 aa	Known RBP	7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	FGF7	P21781	194 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	RNASE4	P34096	147 aa	Known RBP	7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	RPL29	P47914	159 aa	Known RBP	7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	CNPY1	Q3B7I2	92 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	GCSAML	Q5JQS6	135 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	EXOC3-AS1	Q8N2X6	119 aa		7.25	□□□□□ -1.25
LSM4-205	ENST00000597776	BLNK	Q8WV28	456 aa		7.25	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms