RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 WNK1Q9H4A3 2382 aa8□□□□□ -1.13
SS18-217ENST00000580958 TRAV8-1A0A0A6YYK1 113 aa8□□□□□ -1.13
SS18-217ENST00000580958 TRAV8-2A0A0B4J237 113 aa8□□□□□ -1.13
SS18-217ENST00000580958 CXorf65A6NEN9 183 aa8□□□□□ -1.13
SS18-217ENST00000580958 CHEK1O14757 476 aa8□□□□□ -1.13
SS18-217ENST00000580958 NDUFA7O95182 113 aa8□□□□□ -1.13
SS18-217ENST00000580958 GCGP01275 180 aa8□□□□□ -1.13
SS18-217ENST00000580958 CD28P10747 220 aa8□□□□□ -1.13
SS18-217ENST00000580958 HOXD3P31249 432 aaPredicted RBP8□□□□□ -1.13
SS18-217ENST00000580958 SLURP1P55000 103 aa8□□□□□ -1.13
SS18-217ENST00000580958 SYNJ2BPP57105 145 aa8□□□□□ -1.13
SS18-217ENST00000580958 C8orf86Q6ZUL3 223 aa8□□□□□ -1.13
SS18-217ENST00000580958 Q86TA4 180 aa8□□□□□ -1.13
SS18-217ENST00000580958 FAM24BQ8N5W8 94 aa8□□□□□ -1.13
SS18-217ENST00000580958 TMEM75Q8N9X5 138 aa8□□□□□ -1.13
SS18-217ENST00000580958 KLHL30-AS1Q8NEE0 82 aa8□□□□□ -1.13
SS18-217ENST00000580958 LINC01006Q8NI28 216 aa8□□□□□ -1.13
SS18-217ENST00000580958 C4orf3Q8WVX3 66 aa8□□□□□ -1.13
SS18-217ENST00000580958 SLC50A1Q9BRV3 221 aa8□□□□□ -1.13
SS18-217ENST00000580958 RHPN1-AS1Q9BWJ2 59 aa8□□□□□ -1.13
SS18-217ENST00000580958 SELENOKQ9Y6D0 94 aa8□□□□□ -1.13
SS18-217ENST00000580958 URGCP-MRPS24S4R325 110 aa8□□□□□ -1.13
SS18-217ENST00000580958 SETXQ7Z333 2677 aaKnown RBP8□□□□□ -1.13
SS18-217ENST00000580958 SETD2Q9BYW2 2564 aaPredicted RBP8□□□□□ -1.13
SS18-217ENST00000580958 F8P00451 2351 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 IGKV2-40A0A087WW87 121 aaPredicted RBP7.99□□□□□ -1.13
SS18-217ENST00000580958 TRBV6-1A0A0K0K1D8 114 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 TMEM213A2RRL7 107 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 ZNF705FA8MVS1 300 aaPredicted RBP7.99□□□□□ -1.13
SS18-217ENST00000580958 LINC01619G3V211 115 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 K7EQM0 130 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 LGALS9O00182 355 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 PPP1R2P9O14990 202 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 TCF21O43680 179 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 IGKV2D-40P01614 121 aaPredicted RBP7.99□□□□□ -1.13
SS18-217ENST00000580958 IGLV2-11P01706 119 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 MEOX2P50222 304 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 SRSF2Q01130 221 aaKnown RBP7.99□□□□□ -1.13
SS18-217ENST00000580958 ELOBQ15370 118 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 PRNTQ86SH4 94 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 C1QL4Q86Z23 238 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 RNF182Q8N6D2 247 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 C11orf44Q8N8P7 122 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 OR1N2Q8NGR9 330 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 DPF1Q92782 380 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 DUX3Q96PT4 197 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 ASCL2Q99929 193 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 PSG8Q9UQ74 426 aa7.99□□□□□ -1.13
SS18-217ENST00000580958 TGIF2-C20orf24A0A0A6YYL0 155 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 A8MWP6 167 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 PRAC2D3DTV9 90 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 LTAP01374 205 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 PFN1P07737 140 aaKnown RBP7.98□□□□□ -1.13
SS18-217ENST00000580958 CXCL1P09341 107 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 ERVFC1-1P60608 527 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 FLI1Q01543 452 aaPredicted RBP7.98□□□□□ -1.13
SS18-217ENST00000580958 PSG3Q16557 428 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 LCN12Q6JVE5 192 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 TCF24Q7RTU0 167 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 ARL6IP6Q8N6S5 226 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 OR11H1Q8NG94 326 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 C16orf92Q96LL3 132 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 MLST8Q9BVC4 326 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 RNASE7Q9H1E1 156 aaKnown RBP7.98□□□□□ -1.13
SS18-217ENST00000580958 OSTCQ9NRP0 149 aa7.98□□□□□ -1.13
SS18-217ENST00000580958 SERTM2A0A1B0GWG4 89 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 A0A1W2PRX2 142 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 C2orf70A6NJV1 201 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 CRLF1O75462 422 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 S100PP25815 95 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 BMI1P35226 326 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 RPL11P62913 178 aaKnown RBP7.97□□□□□ -1.13
SS18-217ENST00000580958 KLF5Q13887 457 aaPredicted RBP7.97□□□□□ -1.13
SS18-217ENST00000580958 PRR27Q6MZM9 219 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 WFDC12Q8WWY7 111 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 SMIM12Q96EX1 92 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 C20orf173Q96LM9 149 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 CITED2Q99967 270 aaPredicted RBP7.97□□□□□ -1.13
SS18-217ENST00000580958 VGLL1Q99990 258 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 RNF114Q9Y508 228 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 V9GYV3 84 aa7.97□□□□□ -1.13
SS18-217ENST00000580958 IGKV3-7A0A075B6H7 116 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 SOCS3O14543 225 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 GATCO43716 136 aaKnown RBP7.96□□□□□ -1.14
SS18-217ENST00000580958 RAB5AP20339 215 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 IBA57Q5T440 356 aaKnown RBP7.96□□□□□ -1.14
SS18-217ENST00000580958 KCNIP4Q6PIL6 250 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 TMEM183AQ8IXX5 376 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 MRPL53Q96EL3 112 aaKnown RBP7.96□□□□□ -1.14
SS18-217ENST00000580958 NRN1Q9NPD7 142 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 ZNF492Q9P255 531 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 C2CD3Q4AC94 2353 aa7.96□□□□□ -1.14
SS18-217ENST00000580958 A6NJY4 79 aa7.95□□□□□ -1.14
SS18-217ENST00000580958 ZNF705GA8MUZ8 300 aaPredicted RBP7.95□□□□□ -1.14
SS18-217ENST00000580958 FOLR2P14207 255 aa7.95□□□□□ -1.14
SS18-217ENST00000580958 CD33P20138 364 aa7.95□□□□□ -1.14
SS18-217ENST00000580958 PROK1P58294 105 aa7.95□□□□□ -1.14
SS18-217ENST00000580958 FAM3BP58499 235 aaPredicted RBP7.95□□□□□ -1.14
SS18-217ENST00000580958 ERCC8Q13216 396 aa7.95□□□□□ -1.14
SS18-217ENST00000580958 LINC00322Q6ZN03 302 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms