RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 C8orf17Q9NRJ1 99 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 TXNL4BQ9NX01 149 aaKnown RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 NDUFB11Q9NX14 153 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 PRO0461Q9UI25 63 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 PLXNA2O75051 1894 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 SCN8AQ9UQD0 1980 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 HELZP42694 1942 aaKnown RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 IGHV1-58A0A0C4DH39 117 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 IGHV3-66A0A0C4DH42 116 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 FAM236AA0A1B0GUQ0 79 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 FAM236BA0A1B0GV22 79 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 FAM168BA1KXE4 195 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 MEIS3P1A6NDR6 274 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 LEUTXA8MZ59 168 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 C1orf196B1AJZ1 125 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 BUB1B-PAK6H3BSN5 160 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 CCDC179H3BU77 68 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 TMEM256-PLSCR3K7ERE1 68 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 PDCD5O14737 125 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 ZNF324O75467 553 aaPredicted RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 NDUFB2O95178 105 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 NAPSAO96009 420 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 STATHP02808 62 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 CXCL1P09341 107 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 TRAPPC2P0DI81 140 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 TRAPPC2BP0DI82 140 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 FABP2P12104 132 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 ZNF32P17041 273 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 LGALS3P17931 250 aaKnown RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 ELK1P19419 428 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BOP23527 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 ATP6V0CP27449 155 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BBP33778 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 GUCA1AP43080 201 aaPredicted RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 NMUP48645 174 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BDP58876 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BCP62807 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 CCL20P78556 96 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 NDPQ00604 133 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HSD52Q0P140 79 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 FUT5Q11128 374 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 DIAPH2-AS1Q14236 149 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST2H2BEQ16778 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 RNASE13Q5GAN3 156 aaKnown RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 PABPC1L2AQ5JQF8 200 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 COL5A1-AS1Q5SY13 56 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 AADACL3Q5VUY0 350 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 RPL22L1Q6P5R6 122 aaKnown RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 ZNF322Q6U7Q0 402 aaPredicted RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 SSX8Q7RTT4 187 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 KRTAP11-1Q8IUC1 163 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 TEX29Q8N6K0 151 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 OR5D14Q8NGL3 314 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 CCL4L1Q8NHW4 92 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 DEDD2Q8WXF8 326 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 TMEM158Q8WZ71 300 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BHQ93079 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BNQ99877 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H2BMQ99879 126 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 B9D2Q9BPU9 175 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 C1QTNF6Q9BXI9 259 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 CMC2Q9NRP2 79 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 COMMD3Q9UBI1 195 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 SCP2D1Q9UJQ7 156 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 LSM2Q9Y333 95 aaKnown RBP2.29□□□□□ -2.04
NUP88-209ENST00000574855 MYOFQ9NZM1 2061 aa2.29□□□□□ -2.04
NUP88-209ENST00000574855 IGLV1-50A0A075B6I6 118 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 IGHV3OR15-7A0A075B7D8 119 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 TRAV1-2A0A0B4J238 106 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 A0A1B0GWA3 101 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 ZNF727A8MUV8 499 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 J3QLW9 94 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 M0R129 80 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 CST7O76096 145 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 MPC2O95563 127 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 PRM2P04554 102 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 HSPB1P04792 205 aaKnown RBP2.28□□□□□ -2.04
NUP88-209ENST00000574855 IL7P13232 177 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 ZNF19P17023 458 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 CRYGSP22914 178 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 BRS3P32247 399 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 TGFBR1P36897 503 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 RPL30P62888 115 aaKnown RBP2.28□□□□□ -2.04
NUP88-209ENST00000574855 IGLV3-21P80748 117 aaPredicted RBP2.28□□□□□ -2.04
NUP88-209ENST00000574855 LGALS9BQ3B8N2 356 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 HSD17B12Q53GQ0 312 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.28□□□□□ -2.04
NUP88-209ENST00000574855 LGALS9CQ6DKI2 356 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 LCN15Q6UWW0 184 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 GTF2H5Q6ZYL4 71 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 HMGN2P46Q86SG4 172 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 TRAPPC6BQ86SZ2 158 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 DAND5Q8N907 189 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 OR8A1Q8NGG7 326 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 OR8D4Q8NGM9 314 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 ZNF563Q8TA94 476 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 WFDC6Q9BQY6 131 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 SHANK2-AS3Q9BTD1 123 aa2.28□□□□□ -2.04
NUP88-209ENST00000574855 DERL1Q9BUN8 251 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms