RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PEF1Q9UBV8 284 aaKnown RBP11.83□□□□□ -0.52
CUX1-215ENST00000556210 ARMS2P0C7Q2 107 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 LINC00310P59036 64 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 POU2AF1Q16633 256 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 C5orf64Q2M2E5 130 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 OR10AG1Q8NH19 301 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 HLA-DMBP28068 263 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 Q8N7P7 452 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 FMC1Q96HJ9 113 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 EVI2AP22794 236 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 RUSC1-AS1Q66K80 236 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 TRGV9Q99603 122 aa11.82□□□□□ -0.52
CUX1-215ENST00000556210 MGPP08493 103 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 MAPK1IP1LQ8NDC0 245 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 C1orf159Q96HA4 380 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 FAM167A-AS1Q96KT0 104 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 GNLYP22749 145 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 TMEM75Q8N9X5 138 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 OTORQ9NRC9 128 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 PRSS46E5RG02 174 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 NDUFB8O95169 186 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 RNF182Q8N6D2 247 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 C8orf49Q96NF6 230 aa11.81□□□□□ -0.52
CUX1-215ENST00000556210 TRGV3P03979 118 aa11.8□□□□□ -0.52
CUX1-215ENST00000556210 TMEM78Q5T7P6 136 aa11.8□□□□□ -0.52
CUX1-215ENST00000556210 RASL11AQ6T310 242 aa11.8□□□□□ -0.52
CUX1-215ENST00000556210 TRAV40A0A0B4J280 105 aa11.8□□□□□ -0.52
CUX1-215ENST00000556210 LCNL1Q6ZST4 164 aa11.8□□□□□ -0.52
CUX1-215ENST00000556210 TRAV30A0A087WSZ9 112 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 M0R381 172 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 IGLC1P0CG04 106 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 ERCC8Q13216 396 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 PKD1L2Q7Z442 2459 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 C7orf71A4D174 169 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 SPRY2O43597 315 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 DLX6P56179 175 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 ATP5L2Q7Z4Y8 100 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 TMEM213A2RRL7 107 aa11.79□□□□□ -0.52
CUX1-215ENST00000556210 H3BUT2 72 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 CR1LQ2VPA4 569 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 PRELID3AQ96N28 172 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 METTL26Q96S19 204 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 TET2Q6N021 2002 aaPredicted RBP11.78□□□□□ -0.52
CUX1-215ENST00000556210 SAA4P35542 130 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 RIPPLY3P57055 190 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 CDSNQ15517 529 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 LYZL1Q6UWQ5 148 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 AMN1Q8IY45 258 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 TP73-AS1Q9UF72 201 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 LINC00173Q6ZV60 143 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 CHCHD1Q96BP2 118 aaKnown RBP11.78□□□□□ -0.52
CUX1-215ENST00000556210 DUX5Q96PT3 197 aa11.78□□□□□ -0.52
CUX1-215ENST00000556210 FNDC10F2Z333 226 aa11.77□□□□□ -0.52
CUX1-215ENST00000556210 IGLV2-23P01705 113 aa11.77□□□□□ -0.52
CUX1-215ENST00000556210 GCSHP23434 173 aa11.77□□□□□ -0.52
CUX1-215ENST00000556210 FAM120AOSQ5T036 256 aa11.77□□□□□ -0.52
CUX1-215ENST00000556210 HIVEP2P31629 2446 aa11.77□□□□□ -0.52
CUX1-215ENST00000556210 PET117Q6UWS5 81 aa11.77□□□□□ -0.53
CUX1-215ENST00000556210 C7orf69Q9H7B7 122 aa11.77□□□□□ -0.53
CUX1-215ENST00000556210 DSCAML1Q8TD84 2053 aa11.77□□□□□ -0.53
CUX1-215ENST00000556210 BCL6BQ8N143 479 aaPredicted RBP11.77□□□□□ -0.53
CUX1-215ENST00000556210 NEU4Q8WWR8 484 aaPredicted RBP11.77□□□□□ -0.53
CUX1-215ENST00000556210 COL25A1Q9BXS0 654 aaPredicted RBP11.77□□□□□ -0.53
CUX1-215ENST00000556210 MEGF9Q9H1U4 602 aa11.77□□□□□ -0.53
CUX1-215ENST00000556210 SOX21Q9Y651 276 aaPredicted RBP11.77□□□□□ -0.53
CUX1-215ENST00000556210 HIST1H1AQ02539 215 aaPredicted RBP11.76□□□□□ -0.53
CUX1-215ENST00000556210 CLEC2AQ6UVW9 174 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 TNFRSF14Q92956 283 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 CST9LQ9H4G1 147 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 D6R8Y8 96 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 IGKV1-17P01599 117 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 PLP1P60201 277 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 LINC00322Q6ZN03 302 aaPredicted RBP11.76□□□□□ -0.53
CUX1-215ENST00000556210 Q86TA4 180 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 IGHV1-24A0A0C4DH33 117 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 GAGE12BA1L429 117 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 NCOR1P1Q9H4R4 102 aa11.76□□□□□ -0.53
CUX1-215ENST00000556210 IGKV1D-37A0A075B6S9 117 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 ATP5G2Q06055 141 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 PRTN3P24158 256 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 TMEM97Q5BJF2 176 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 FAM71F2Q6NXP2 309 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 FER1L6-AS1Q8NA97 138 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 ZNF462Q96JM2 2506 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 BMI1P35226 326 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 CTRLP40313 264 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 NBL1P41271 181 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 ZC2HC1AQ96GY0 325 aa11.75□□□□□ -0.53
CUX1-215ENST00000556210 OCIAD2Q56VL3 154 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 FAM231DQ6ZW35 169 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 PSG9Q00887 426 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 C3orf36Q3SXR2 165 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 PVRIGQ6DKI7 326 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 ZNF414Q96IQ9 312 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 MSRB2Q9Y3D2 182 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 JMJD1CQ15652 2540 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 ATP6V0E1O15342 81 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 TOMM40O96008 361 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 CACNG7P62955 275 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms