RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 PVRIGQ6DKI7 326 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 IGF2-ASQ6U949 168 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 WFDC3Q8IUB2 231 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 ZNF491Q8N8L2 437 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 NEU4Q8WWR8 484 aaPredicted RBP7.51□□□□□ -1.21
SYNE2-213ENST00000554805 PRELID3AQ96N28 172 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 AP1S3Q96PC3 154 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 DPM3Q9P2X0 92 aa7.51□□□□□ -1.21
SYNE2-213ENST00000554805 OR2T8A6NH00 312 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 NPIPB6E9PJ23 425 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 H3BRN7 92 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 MFAP4P55083 255 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 BVES-AS1Q5T3Y7 98 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 SIGLEC15Q6ZMC9 328 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 AMN1Q8IY45 258 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 BCL6BQ8N143 479 aaPredicted RBP7.5□□□□□ -1.21
SYNE2-213ENST00000554805 TMEM75Q8N9X5 138 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 POLQO75417 2590 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 TLN2Q9Y4G6 2542 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 K7EP13 123 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 GPR183P32249 361 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 AMMECR1LQ6DCA0 310 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 USP9YO00507 2555 aaPredicted RBP7.5□□□□□ -1.21
SYNE2-213ENST00000554805 DOPEY2Q9Y3R5 2298 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 SMKR1H3BMG3 65 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 TWIST1Q15672 202 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 ZNF672Q499Z4 452 aaPredicted RBP7.5□□□□□ -1.21
SYNE2-213ENST00000554805 ZNF414Q96IQ9 312 aa7.5□□□□□ -1.21
SYNE2-213ENST00000554805 HIVEP3Q5T1R4 2406 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 NCR2O95944 276 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 ORM1P02763 201 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 FAM106CPP0CH98 169 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 CKS2P33552 79 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 FAM106AQ4KMX7 169 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 Q8TAT8 98 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 MS4A6AQ9H2W1 248 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 CRXO43186 299 aaPredicted RBP7.49□□□□□ -1.21
SYNE2-213ENST00000554805 SH2D1AO60880 128 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 TMEM95Q3KNT9 176 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 TIMD4Q96H15 378 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 ZNF747Q9BV97 191 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 SCRT2Q9NQ03 307 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 SELENOKQ9Y6D0 94 aa7.49□□□□□ -1.21
SYNE2-213ENST00000554805 CRIP1P50238 77 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 HIST1H1AQ02539 215 aaPredicted RBP7.48□□□□□ -1.21
SYNE2-213ENST00000554805 LOXL1Q08397 574 aaPredicted RBP7.48□□□□□ -1.21
SYNE2-213ENST00000554805 VPS25Q9BRG1 176 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 RAB1BQ9H0U4 201 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 C21orf62Q9NYP8 219 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 C1RLQ9NZP8 487 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 A0A1B0GW15 77 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 NPIPB5A8MRT5 1133 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 TAX1BP3O14907 124 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 CACNG7P62955 275 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 Q6AWC8 147 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 CFAP161Q6P656 301 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 CLEC2AQ6UVW9 174 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 ORMDL3Q8N138 153 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 Q8NA96 180 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 TRAV30A0A087WSZ9 112 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 IGHV2-70DA0A0C4DH43 119 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 ZNF785A8K8V0 405 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 LDLRAD2Q5SZI1 272 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 LYPD1Q8N2G4 141 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 RNF5Q99942 180 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 SIGLEC8Q9NYZ4 499 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 NOTCH2Q04721 2471 aa7.48□□□□□ -1.21
SYNE2-213ENST00000554805 GRNP28799 593 aaKnown RBP7.47□□□□□ -1.21
SYNE2-213ENST00000554805 LINC01545Q5VT33 79 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 C18orf15Q96N68 181 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 LRRK2Q5S007 2527 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 SCGB2A1O75556 95 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 RPL7P18124 248 aaKnown RBP7.47□□□□□ -1.21
SYNE2-213ENST00000554805 NMUP48645 174 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 C5orf64Q2M2E5 130 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 SAPCD1Q5SSQ6 148 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 ARPC1AQ92747 370 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 THYN1Q9P016 225 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 JKAMPQ9P055 326 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 LOC105371242A0A075B767 164 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 IGHV3OR16-13A0A075B7E8 117 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 IGHV3-74A0A0B4J1X5 117 aa7.47□□□□□ -1.21
SYNE2-213ENST00000554805 NAA38Q9BRA0 125 aaKnown RBP7.47□□□□□ -1.21
SYNE2-213ENST00000554805 HLA-DMBP28068 263 aa7.46□□□□□ -1.21
SYNE2-213ENST00000554805 PPIFP30405 207 aaKnown RBP7.46□□□□□ -1.21
SYNE2-213ENST00000554805 PSG9Q00887 426 aa7.46□□□□□ -1.21
SYNE2-213ENST00000554805 FAM104BQ5XKR9 115 aa7.46□□□□□ -1.21
SYNE2-213ENST00000554805 DEFB125Q8N687 156 aa7.46□□□□□ -1.21
SYNE2-213ENST00000554805 FER1L6-AS1Q8NA97 138 aa7.46□□□□□ -1.21
SYNE2-213ENST00000554805 PTPN13Q12923 2485 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 COX8AP10176 69 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 PAX2Q02962 417 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 MRPL51Q4U2R6 128 aaKnown RBP7.46□□□□□ -1.22
SYNE2-213ENST00000554805 TMEM97Q5BJF2 176 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 SRSF8Q9BRL6 282 aaKnown RBP7.46□□□□□ -1.22
SYNE2-213ENST00000554805 IGHV3-66A0A0C4DH42 116 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 C7orf71A4D174 169 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 CD5LO43866 347 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 RAB37Q96AX2 223 aa7.46□□□□□ -1.22
SYNE2-213ENST00000554805 RABAC1Q9UI14 185 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms