RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 PATE2Q6UY27 113 aa9.71□□□□□ -0.85
SHMT2-207ENST00000553837 NPIPB3Q92617 1050 aa9.71□□□□□ -0.85
SHMT2-207ENST00000553837 RAB37Q96AX2 223 aa9.71□□□□□ -0.85
SHMT2-207ENST00000553837 NAA38Q9BRA0 125 aaKnown RBP9.71□□□□□ -0.85
SHMT2-207ENST00000553837 MALRD1Q5VYJ5 2156 aa9.71□□□□□ -0.85
SHMT2-207ENST00000553837 IGF2RP11717 2491 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 B9A039 149 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 ENSAO43768 121 aaKnown RBP9.71□□□□□ -0.86
SHMT2-207ENST00000553837 NCR2O95944 276 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 LTAP01374 205 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 APELAP0DMC3 54 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 PRSS3P2Q8NHM4 247 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 SGK494Q96LW2 274 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 PSG8Q9UQ74 426 aa9.71□□□□□ -0.86
SHMT2-207ENST00000553837 HRNRQ86YZ3 2850 aaPredicted RBP9.7□□□□□ -0.86
SHMT2-207ENST00000553837 ADAMTSL5Q6ZMM2 481 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 F8W1H4 67 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 FSTL3O95633 263 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 IGLV1-47P01700 117 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 SMIM13P0DJ93 91 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 SAMD5Q5TGI4 173 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 SIGLEC8Q9NYZ4 499 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 ERG28Q9UKR5 140 aa9.7□□□□□ -0.86
SHMT2-207ENST00000553837 TCRBV4S1A1TA0A5B7 111 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 NPIPB6E9PJ23 425 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 LY6HO94772 140 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 CRYGBP07316 175 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 HERV-K104P63124 156 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 LGALS9BQ3B8N2 356 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 LGALS9CQ6DKI2 356 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 HCP5Q6MZN7 132 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 LINC00305Q7Z4B0 112 aa9.69□□□□□ -0.86
SHMT2-207ENST00000553837 RALYQ9UKM9 306 aaKnown RBP9.69□□□□□ -0.86
SHMT2-207ENST00000553837 GAGE5Q13069 117 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 GAGE6Q13070 117 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 RIGQ13278 110 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 ODF1Q14990 250 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 VMA21Q3ZAQ7 101 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 TNFRSF18Q9Y5U5 241 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 ATRXP46100 2492 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 ABCA4P78363 2273 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 IGHV3-21A0A0B4J1V1 117 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 COL8A1P27658 744 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 LCNL1Q6ZST4 164 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 THAP8Q8NA92 274 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 IGFBPL1Q8WX77 278 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 SPANXB1Q9NS25 103 aaPredicted RBP9.68□□□□□ -0.86
SHMT2-207ENST00000553837 SS18L2Q9UHA2 77 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 RAXQ9Y2V3 346 aa9.68□□□□□ -0.86
SHMT2-207ENST00000553837 SPTA1P02549 2419 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 TPRP12270 2363 aaKnown RBP9.67□□□□□ -0.86
SHMT2-207ENST00000553837 ANKHD1Q8IWZ3 2542 aaKnown RBP9.67□□□□□ -0.86
SHMT2-207ENST00000553837 A0A1B0GUT8 65 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 A0A1B0GW15 77 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 COX7A1P24310 79 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 OR8A1Q8NGG7 326 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 CSMD1Q96PZ7 3565 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 IGHV1-3A0A0C4DH29 117 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 BUB1B-PAK6H3BSN5 160 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 TCRAP04437 139 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 TTC9CQ8N5M4 171 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 RAX2Q96IS3 184 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 CYSLTR1Q9Y271 337 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 MSRB2Q9Y3D2 182 aa9.67□□□□□ -0.86
SHMT2-207ENST00000553837 NBASA2RRP1 2371 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 ARHGAP32A7KAX9 2087 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 CCL21O00585 134 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 ADORA2A-AS1P86434 159 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 FBXL19-AS1Q494R0 122 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 ZNF672Q499Z4 452 aaPredicted RBP9.66□□□□□ -0.86
SHMT2-207ENST00000553837 PVRIGQ6DKI7 326 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 GATD1Q8NB37 220 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 VGLL1Q99990 258 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 SIGLEC9Q9Y336 463 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 INSIG2Q9Y5U4 225 aa9.66□□□□□ -0.86
SHMT2-207ENST00000553837 SUB1P53999 127 aaKnown RBP eCLIP9.65□□□□□ -0.862e-7■■■□□ 15.5
SHMT2-207ENST00000553837 TEX22C9J3V5 150 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 ARL3P36405 182 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 RPL27AP46776 148 aaKnown RBP9.65□□□□□ -0.86
SHMT2-207ENST00000553837 PSMG4Q5JS54 123 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 PIP4P2Q8N4L2 257 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 TMEM116Q8NCL8 245 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 HIF1ANQ9NWT6 349 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 SPTBN4Q9H254 2564 aa9.65□□□□□ -0.86
SHMT2-207ENST00000553837 ORM2P19652 201 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 FBXL15Q9H469 300 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 LY6LH3BQJ8 138 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 CT45A10P0DMU9 189 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 IFI27P40305 119 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-207ENST00000553837 CACNG7P62955 275 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 C8orf86Q6ZUL3 223 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 SPAG8Q99932 426 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-207ENST00000553837 Q9H3A6 140 aa9.64□□□□□ -0.87
SHMT2-207ENST00000553837 CACNA1AO00555 2505 aa9.63□□□□□ -0.87
SHMT2-207ENST00000553837 A0A096LNJ9 63 aa9.63□□□□□ -0.87
SHMT2-207ENST00000553837 ARMS2P0C7Q2 107 aa9.63□□□□□ -0.87
SHMT2-207ENST00000553837 NMUP48645 174 aa9.63□□□□□ -0.87
SHMT2-207ENST00000553837 Q86TA4 180 aa9.63□□□□□ -0.87
SHMT2-207ENST00000553837 ZNF414Q96IQ9 312 aa9.63□□□□□ -0.87
SHMT2-207ENST00000553837 SPXQ9BT56 116 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms