RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 OR5AL1P0C617 328 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 CT45A10P0DMU9 189 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 POLQO75417 2590 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 NPIPB6E9PJ23 425 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 J3KRW8 73 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 RELQ04864 619 aaPredicted RBP11.77□□□□□ -0.53
USP28-214ENST00000545540 PVRIGQ6DKI7 326 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 COX11Q9Y6N1 276 aa11.77□□□□□ -0.53
USP28-214ENST00000545540 LOC105371242A0A075B767 164 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 LINC01548A6NM66 108 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 HSBP1L1C9JCN9 74 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 HAX1O00165 279 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 SH2D1AO60880 128 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 ZFP36P26651 326 aaKnown RBP11.76□□□□□ -0.53
USP28-214ENST00000545540 GAGE1Q13065 139 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 RNF151Q2KHN1 245 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 C5orf64Q2M2E5 130 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 CFHR4Q92496 578 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 USP9YO00507 2555 aaPredicted RBP11.76□□□□□ -0.53
USP28-214ENST00000545540 F8W735 103 aaPredicted RBP11.76□□□□□ -0.53
USP28-214ENST00000545540 PRSS57Q6UWY2 283 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 NDFIP1Q9BT67 221 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 AAMDCQ9H7C9 122 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 ITPR1Q14643 2758 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 PRAC2D3DTV9 90 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 EGR2P11161 476 aaPredicted RBP11.76□□□□□ -0.53
USP28-214ENST00000545540 TWIST1Q15672 202 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 MRPS16Q9Y3D3 137 aaKnown RBP11.76□□□□□ -0.53
USP28-214ENST00000545540 SORL1Q92673 2214 aa11.76□□□□□ -0.53
USP28-214ENST00000545540 TMEM189A5PLL7 270 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 ORM1P02763 201 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 EVI2AP22794 236 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 GPR183P32249 361 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 SLC25A34Q6PIV7 304 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 ZNF738Q8NE65 137 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 TNFRSF14Q92956 283 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 VKORC1Q9BQB6 163 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 TMEM191AQ9H0A3 160 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 K7EQM0 130 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 GATA1P15976 413 aaPredicted RBP11.75□□□□□ -0.53
USP28-214ENST00000545540 RIGQ13278 110 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 ARPC1AQ92747 370 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 C21orf62Q9NYP8 219 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 FLNCQ14315 2725 aa11.75□□□□□ -0.53
USP28-214ENST00000545540 MRPS12O15235 138 aaKnown RBP11.74□□□□□ -0.53
USP28-214ENST00000545540 CT83Q5H943 113 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 VMO1Q7Z5L0 202 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 CHCHD1Q96BP2 118 aaKnown RBP11.74□□□□□ -0.53
USP28-214ENST00000545540 TMEM14CQ9P0S9 112 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 A0A1W2PPR1 153 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 G3V318 75 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 TM4SF20Q53R12 229 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 SIGLEC8Q9NYZ4 499 aa11.74□□□□□ -0.53
USP28-214ENST00000545540 MFAP4P55083 255 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 GFRA4Q9GZZ7 299 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 RAXQ9Y2V3 346 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 PRELID3AQ96N28 172 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 ZNF747Q9BV97 191 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 TTTY13Q9BZ97 58 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 NHLH1Q02575 133 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 ANKRD39Q53RE8 183 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 OR4C5Q8NGB2 326 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 SMAD5-AS1Q9Y6J3 95 aa11.73□□□□□ -0.53
USP28-214ENST00000545540 A0A096LNJ9 63 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 CSN1S1P47710 185 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 CACNG7P62955 275 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 DEFB104AQ8WTQ1 72 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 CACNA1AO00555 2505 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 ZANQ9Y493 2812 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 K7ENP7 123 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 CTSGP08311 255 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 AMMECR1LQ6DCA0 310 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 MRPL52Q86TS9 123 aaKnown RBP11.72□□□□□ -0.53
USP28-214ENST00000545540 SMIM12Q96EX1 92 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 IGLV11-55A0A075B6I3 123 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 NPYP01303 97 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 CLEC3BP05452 202 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 DEFB1P60022 68 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 BVES-AS1Q5T3Y7 98 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 RAB1BQ9H0U4 201 aa11.72□□□□□ -0.53
USP28-214ENST00000545540 HOXB4P17483 251 aaPredicted RBP11.71□□□□□ -0.53
USP28-214ENST00000545540 CKS2P33552 79 aa11.71□□□□□ -0.53
USP28-214ENST00000545540 UBE2V1Q13404 147 aa11.71□□□□□ -0.53
USP28-214ENST00000545540 MRPL51Q4U2R6 128 aaKnown RBP11.71□□□□□ -0.53
USP28-214ENST00000545540 PIP4P2Q8N4L2 257 aa11.71□□□□□ -0.53
USP28-214ENST00000545540 WI2-2373I1.2A0A1W2PRP0 233 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 K7EMI3 77 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 CRXO43186 299 aaPredicted RBP11.71□□□□□ -0.54
USP28-214ENST00000545540 RHOGP84095 191 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 ADORA2A-AS1P86434 159 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 TMEM219Q86XT9 240 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 TIMD4Q96H15 378 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 SCRT2Q9NQ03 307 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 HSPB8Q9UJY1 196 aa11.71□□□□□ -0.54
USP28-214ENST00000545540 SOX21Q9Y651 276 aaPredicted RBP11.71□□□□□ -0.54
USP28-214ENST00000545540 IGKV3-7A0A075B6H7 116 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 C15orf32Q32M92 178 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 TAX1BP3O14907 124 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 PRR25Q96S07 402 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 ST20Q9HBF5 79 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms