RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 RXFP4Q8TDU9 374 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 RPUSD4Q96CM3 377 aaKnown RBP10.72□□□□□ -0.69
RTN3-211ENST00000542238 UHRF2Q96PU4 802 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 C20orf85Q9H1P6 137 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 A0A0J9YY99 117 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 SFT2D2O95562 160 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 HOXB5P09067 269 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 ANXA7P20073 488 aaKnown RBP10.71□□□□□ -0.69
RTN3-211ENST00000542238 BTF3P20290 206 aaKnown RBP10.71□□□□□ -0.69
RTN3-211ENST00000542238 PLP1P60201 277 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 C20orf144Q9BQM9 153 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 UPK3BQ9BT76 320 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 KRTAP1-5Q9BYS1 174 aa10.71□□□□□ -0.69
RTN3-211ENST00000542238 LRP1BQ9NZR2 4599 aa10.7□□□□□ -0.7
RTN3-211ENST00000542238 RLN2P04090 185 aa10.7□□□□□ -0.7
RTN3-211ENST00000542238 KRTAP10-2P60368 255 aa10.7□□□□□ -0.7
RTN3-211ENST00000542238 PSENENQ9NZ42 101 aa10.7□□□□□ -0.7
RTN3-211ENST00000542238 GAGE12BA1L429 117 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 SNURFLB1AK76 121 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 H3BNG1 76 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 GAGE7O76087 117 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 OR4E1P0C645 316 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 GAGE12FP0CL80 117 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 GAGE12GP0CL81 117 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 GAGE12IP0CL82 117 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 CXCL2P19875 107 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 DLK1P80370 383 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 PPP1R1AQ13522 171 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 ESRGQ1W209 222 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 TEX261Q6UWH6 196 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 LCN15Q6UWW0 184 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 ARL6Q9H0F7 186 aa10.69□□□□□ -0.7
RTN3-211ENST00000542238 MRPS16Q9Y3D3 137 aaKnown RBP10.69□□□□□ -0.7
RTN3-211ENST00000542238 PMS2P5A8MQ11 134 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 IFNA7P01567 189 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 PRB4P10163 310 aaPredicted RBP10.68□□□□□ -0.7
RTN3-211ENST00000542238 ID3Q02535 119 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 CLLU1Q5K131 121 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 LINC00612Q8N6U2 182 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 ZNF680Q8NEM1 530 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 OR11H4Q8NGC9 324 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 SLC50A1Q9BRV3 221 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 ARV1Q9H2C2 271 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 NPVFQ9HCQ7 196 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 ZNF586Q9NXT0 402 aa10.68□□□□□ -0.7
RTN3-211ENST00000542238 C9orf170A2RU37 121 aa10.67□□□□□ -0.7
RTN3-211ENST00000542238 HOXA5P20719 270 aa10.67□□□□□ -0.7
RTN3-211ENST00000542238 POLR2GP62487 172 aaKnown RBP eCLIP10.67□□□□□ -0.7
RTN3-211ENST00000542238 PXDC1Q5TGL8 231 aa10.67□□□□□ -0.7
RTN3-211ENST00000542238 MITD1Q8WV92 249 aa10.67□□□□□ -0.7
RTN3-211ENST00000542238 ZNF331Q9NQX6 463 aaPredicted RBP10.67□□□□□ -0.7
RTN3-211ENST00000542238 FLVCR2Q9UPI3 526 aa10.67□□□□□ -0.7
RTN3-211ENST00000542238 APOBP04114 4563 aaKnown RBP10.67□□□□□ -0.7
RTN3-211ENST00000542238 EPM2AB3EWF7 344 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 SSNA1O43805 119 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 GIPP09681 153 aaPredicted RBP10.66□□□□□ -0.7
RTN3-211ENST00000542238 KIR3DS1Q14943 382 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 LGALSLQ3ZCW2 172 aaPredicted RBP10.66□□□□□ -0.7
RTN3-211ENST00000542238 GFI1BQ5VTD9 330 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 TEPPQ6URK8 271 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 PATE2Q6UY27 113 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 BPIFA4PQ86YQ2 179 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 SUN5Q8TC36 379 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 MGAT4CQ9UBM8 478 aa10.66□□□□□ -0.7
RTN3-211ENST00000542238 FNDC10F2Z333 226 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 G3V3Q6 166 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 K7EPK0 472 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 GOSR2O14653 212 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 MRPS12O15235 138 aaKnown RBP10.65□□□□□ -0.7
RTN3-211ENST00000542238 SSSCA1O60232 199 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 TSC22D2O75157 780 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 TOR2AQ5JU69 321 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 LINC00305Q7Z4B0 112 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 OR10P1Q8NGE3 313 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 SMIM8Q96KF7 97 aa10.65□□□□□ -0.7
RTN3-211ENST00000542238 PARD6GQ9BYG4 376 aaPredicted RBP10.65□□□□□ -0.7
RTN3-211ENST00000542238 GPN1Q9HCN4 374 aaPredicted RBP10.65□□□□□ -0.7
RTN3-211ENST00000542238 DNAH5Q8TE73 4624 aa10.65□□□□□ -0.71
RTN3-211ENST00000542238 EREGO14944 169 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 SNRPCP09234 159 aaKnown RBP10.64□□□□□ -0.71
RTN3-211ENST00000542238 METTL15P1P0C7V9 234 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 SLC38A11Q08AI6 406 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 C4orf46Q504U0 113 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 ZNF546Q86UE3 836 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 TMPRSS5Q9H3S3 457 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 PXMP4Q9Y6I8 212 aa10.64□□□□□ -0.71
RTN3-211ENST00000542238 DMBT1Q9UGM3 2413 aaPredicted RBP10.64□□□□□ -0.71
RTN3-211ENST00000542238 J3KRW8 73 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 MPC2O95563 127 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 LEPP41159 167 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 LINC00315P59091 139 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 DAZ2Q13117 558 aaKnown RBP10.63□□□□□ -0.71
RTN3-211ENST00000542238 TMEM14EPQ6UXP3 125 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 OR2T35Q8NGX2 323 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 PYGO2Q9BRQ0 406 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 PGPEP1Q9NXJ5 209 aa10.63□□□□□ -0.71
RTN3-211ENST00000542238 TRGV2A0A075B6R0 118 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 TRAV12-3A0A0B4J271 114 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 PRAC2D3DTV9 90 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 COX7A2P2O60397 106 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 332 ms