RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 C20orf173Q96LM9 149 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 VGLL1Q99990 258 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 AAMDCQ9H7C9 122 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 IL36BQ9NZH7 164 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 PSG8Q9UQ74 426 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 F8P00451 2351 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 IGHV7-4-1A0A0J9YVY3 117 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 ZNF253O75346 499 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 TRGC2P03986 189 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 TCL1AP56279 114 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 PSG3Q16557 428 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 IBA57Q5T440 356 aaKnown RBP9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 Q8TAT8 98 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 ZC2HC1AQ96GY0 325 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 C8orf49Q96NF6 230 aa9.33□□□□□ -0.92
AP003559.1-201ENST00000540906 NF1P21359 2839 aa9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 TRBV6-1A0A0K0K1D8 114 aa9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 C19orf71A6NCJ1 209 aa9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 C1orf196B1AJZ1 125 aa9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 FLI1Q01543 452 aaPredicted RBP9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 ERCC8Q13216 396 aa9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 TMEM183AQ8IXX5 376 aa9.32□□□□□ -0.92
AP003559.1-201ENST00000540906 TMEM213A2RRL7 107 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 SOCS3O14543 225 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 S100A9P06702 114 aaKnown RBP9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 S100PP25815 95 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 CRIP1P50238 77 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 DEFB1P60022 68 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 SRSF2Q01130 221 aaKnown RBP9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 FOXL1Q12952 345 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 LCN12Q6JVE5 192 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 FAM231DQ6ZW35 169 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 WIPF2Q8TF74 440 aaPredicted RBP9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 UBE2E2Q96LR5 201 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 DUX3Q96PT4 197 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 IMMP2LQ96T52 175 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 RHPN1-AS1Q9BWJ2 59 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 SMPXQ9UHP9 88 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 IGKV3-7A0A075B6H7 116 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 ZNF705GA8MUZ8 300 aaPredicted RBP9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 SPINK4O60575 86 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 SRD5A1P18405 259 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 RPEL1Q2QD12 228 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 FRZBQ92765 325 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 GPR61Q9BZJ8 451 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 DAZ1Q9NQZ3 744 aaKnown RBP9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 TMEM160Q9NX00 188 aa9.31□□□□□ -0.92
AP003559.1-201ENST00000540906 GATCO43716 136 aaKnown RBP9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 TYMSP04818 313 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 S100A7P31151 101 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 HOXD3P31249 432 aaPredicted RBP9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 SLURP1P55000 103 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 SYNJ2BPP57105 145 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 RAB5BP61020 215 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 KCNIP4Q6PIL6 250 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 C11orf44Q8N8P7 122 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 SRD5A3Q9H8P0 318 aa9.3□□□□□ -0.92
AP003559.1-201ENST00000540906 SMIM27A0A1W2PRY6 76 aa9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 INAFM1C9JVW0 142 aa9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 RNASE1P07998 156 aaKnown RBP9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 ZNF705DP0CH99 300 aaPredicted RBP9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 ZNF705BP0CI00 300 aaPredicted RBP9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 CSN1S1P47710 185 aa9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 ADAMTSL5Q6ZMM2 481 aa9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 ZNF492Q9P255 531 aa9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 TEP1Q99973 2627 aaKnown RBP9.29□□□□□ -0.92
AP003559.1-201ENST00000540906 K7EMT4 169 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 RPL19P84098 196 aaKnown RBP9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 FAM106AQ4KMX7 169 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 SMIM12Q96EX1 92 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 SLC50A1Q9BRV3 221 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIVEP2P31629 2446 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BKO60814 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BJP06899 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 GZMBP10144 247 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BOP23527 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BBP33778 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 ZNF80P51504 273 aaPredicted RBP9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BDP58876 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HILS1P60008 231 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BCP62807 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST2H2BEQ16778 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 PRR31Q5SQ13 230 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 TCF24Q7RTU0 167 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 GBGT1Q8N5D6 347 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BHQ93079 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 GRAMD2BQ96HH9 432 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 C16orf92Q96LL3 132 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BNQ99877 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 HIST1H2BMQ99879 126 aa9.28□□□□□ -0.92
AP003559.1-201ENST00000540906 K7EQM0 130 aa9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 TRGC1P0CF51 173 aa9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 CD28P10747 220 aa9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 CDX1P47902 265 aaPredicted RBP9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 SNRPEP62304 92 aaKnown RBP9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 KHDC1LQ5JSQ8 128 aa9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 REC114Q7Z4M0 266 aa9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 LINC01006Q8NI28 216 aa9.27□□□□□ -0.93
AP003559.1-201ENST00000540906 PRR25Q96S07 402 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms