RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 C1orf122Q6ZSJ8 110 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 HAPLN4Q86UW8 402 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 UBE2E2Q96LR5 201 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 SIGLEC9Q9Y336 463 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 PDE6HQ13956 83 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 SPACA3Q8IXA5 215 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 TRBV6-6A0A0A6YYG2 114 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 FNDC10F2Z333 226 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 TRPT1Q86TN4 253 aaKnown RBP8.67□□□□□ -1.02
CLIP1-209ENST00000537178 GFI1Q99684 422 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 SRSF8Q9BRL6 282 aaKnown RBP8.67□□□□□ -1.02
CLIP1-209ENST00000537178 DOCK9Q9BZ29 2069 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 GAGE12BA1L429 117 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 KLRD1Q13241 179 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 AMN1Q8IY45 258 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 DAZ1Q9NQZ3 744 aaKnown RBP8.66□□□□□ -1.02
CLIP1-209ENST00000537178 PRB4P10163 310 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-209ENST00000537178 KLHL30-AS1Q8NEE0 82 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 COX11Q9Y6N1 276 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 PINLYPA6NC86 204 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 HOXD3P31249 432 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-209ENST00000537178 SUMO4Q6EEV6 95 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 LCNL1Q6ZST4 164 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 DEFB104AQ8WTQ1 72 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 NABP1Q96AH0 204 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 DEFB130BP0DP73 79 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 DEFB130AP0DP74 79 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 NTF4P34130 210 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 C9orf153Q5TBE3 101 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 ADAMTSL5Q6ZMM2 481 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 CD177Q8N6Q3 437 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 GFRA4Q9GZZ7 299 aa8.66□□□□□ -1.02
CLIP1-209ENST00000537178 TRAV3A0A0B4J244 114 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 ARMS2P0C7Q2 107 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 FOXG1P55316 489 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-209ENST00000537178 HGFACQ04756 655 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 ZNF114Q8NC26 417 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 SELENOKQ9Y6D0 94 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 MYO7BQ6PIF6 2116 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 TRBV20-1A0A075B6N2 111 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 A0A087WWL8 130 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 BUB1B-PAK6H3BSN5 160 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 ZNF561-AS1K7EIQ3 104 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 EYSQ5T1H1 3165 aa8.65□□□□□ -1.02
CLIP1-209ENST00000537178 SPANXDQ9BXN6 97 aa8.65□□□□□ -1.03
CLIP1-209ENST00000537178 UBL5Q9BZL1 73 aa8.65□□□□□ -1.03
CLIP1-209ENST00000537178 BRD3OSQ6XYD6 125 aa8.65□□□□□ -1.03
CLIP1-209ENST00000537178 Q86TA4 180 aa8.65□□□□□ -1.03
CLIP1-209ENST00000537178 GGNQ86UU5 652 aa8.65□□□□□ -1.03
CLIP1-209ENST00000537178 LY6DQ14210 128 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 IGKV1-27A0A075B6S5 117 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 ATG2AQ2TAZ0 1938 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 EREGO14944 169 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 SHANK2-AS3Q9BTD1 123 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 DOCK7Q96N67 2140 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 CFAP54Q96N23 3096 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 NTN3O00634 580 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-209ENST00000537178 RNASE2P10153 161 aaKnown RBP8.64□□□□□ -1.03
CLIP1-209ENST00000537178 FREM3P0C091 2139 aa8.64□□□□□ -1.03
CLIP1-209ENST00000537178 FAM231BA6NCW3 169 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 C15orf62A8K5M9 175 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 SMKR1H3BMG3 65 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 OVOL3O00110 214 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 SLC25A16P16260 332 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 ZNF329Q86UD4 541 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 FLVCR1-AS1Q8TAF5 88 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 UBE2WQ96B02 151 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 USF3Q68DE3 2245 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 EFNA2O43921 213 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 DEFB131AP59861 70 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 PRR31Q5SQ13 230 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 TMEM105Q8N8V8 129 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 PMVKQ15126 192 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 IL17RELQ6ZVW7 336 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 TMEM141Q96I45 108 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 LINC00473A8K010 186 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 NKAPP1Q8N9T2 125 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 FANCMQ8IYD8 2048 aa8.63□□□□□ -1.03
CLIP1-209ENST00000537178 MMP23AO75900 390 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 Q6ZS49 121 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 GAFA1Q96PS6 74 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 IGFL4Q6B9Z1 124 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 CPAMD8Q8IZJ3 1885 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 C2orf66Q6UXQ4 117 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 Q0VG73 95 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 UTF1Q5T230 341 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 ZNF492Q9P255 531 aa8.62□□□□□ -1.03
CLIP1-209ENST00000537178 TRBV25-1A0A075B6N4 114 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 NDUFB8O95169 186 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 SYNJ2BPP57105 145 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 TP53TG1Q9Y2A0 90 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 MSRB2Q9Y3D2 182 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 LAMA1P25391 3075 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 MED12Q93074 2177 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 SLAQ13239 276 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 HAMPP81172 84 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 Q6P435 159 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 ZNF664Q8N3J9 261 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 STPG4Q8N801 248 aa8.61□□□□□ -1.03
CLIP1-209ENST00000537178 PI4KAP42356 2102 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms