RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZNF331Q9NQX6 463 aaPredicted RBP7.43□□□□□ -1.22
VPS28-204ENST00000526054 CLEC5AQ9NY25 188 aa7.43□□□□□ -1.22
VPS28-204ENST00000526054 HLA-DRB4X5D2U9 266 aa7.43□□□□□ -1.22
VPS28-204ENST00000526054 UMAD1C9J7I0 102 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 H3BQ15 152 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 OR7C2O60412 319 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 ZNF253O75346 499 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 SNRPCP09234 159 aaKnown RBP7.42□□□□□ -1.22
VPS28-204ENST00000526054 PYYP10082 97 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 CDC34P49427 236 aaPredicted RBP7.42□□□□□ -1.22
VPS28-204ENST00000526054 RAB5CP51148 216 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 NUTF2P61970 127 aaKnown RBP7.42□□□□□ -1.22
VPS28-204ENST00000526054 UBE2L3P68036 154 aaKnown RBP7.42□□□□□ -1.22
VPS28-204ENST00000526054 PDE6HQ13956 83 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 TMEM41BQ5BJD5 291 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 AKR1C8PQ5T2L2 129 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 FAM122CQ6P4D5 195 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 RNF182Q8N6D2 247 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 OR10G4Q8NGN3 311 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 OR10G9Q8NGN4 311 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 OR10G7Q8NGN6 311 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 RNF141Q8WVD5 230 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 FAM167A-AS1Q96KT0 104 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 PAXXQ9BUH6 204 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 KRTAP17-1Q9BYP8 105 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 RFNGQ9Y644 331 aa7.42□□□□□ -1.22
VPS28-204ENST00000526054 TRBV19A0A075B6N1 114 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 H3BMM0 161 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 H3BTX0 84 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 SLC17A3O00476 420 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 DUSP14O95147 198 aaKnown RBP7.41□□□□□ -1.22
VPS28-204ENST00000526054 CA1P00915 261 aaPredicted RBP7.41□□□□□ -1.22
VPS28-204ENST00000526054 SULT1A2P50226 295 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 PSG9Q00887 426 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 PSG3Q16557 428 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 FAM74A1Q5RGS3 127 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 IGFL4Q6B9Z1 124 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 CEMP1Q6PRD7 247 aaPredicted RBP7.41□□□□□ -1.22
VPS28-204ENST00000526054 PQLC2Q6ZP29 291 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 BLNKQ8WV28 456 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 RNF183Q96D59 192 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 AAMDCQ9H7C9 122 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 ZNF586Q9NXT0 402 aa7.41□□□□□ -1.22
VPS28-204ENST00000526054 KLK5Q9Y337 293 aaPredicted RBP7.41□□□□□ -1.22
VPS28-204ENST00000526054 A0A0J9YX75 114 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 F6UB75 175 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 OR10J4P0C629 311 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 NBEAP1P0C6P0 100 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 HLA-DMBP28068 263 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 DEFB1P60022 68 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 GDF5OSQ5U4N7 250 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 DPPA3Q6W0C5 159 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 OR4B1Q8NGF8 309 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 RPUSD4Q96CM3 377 aaKnown RBP7.4□□□□□ -1.22
VPS28-204ENST00000526054 FXYD5Q96DB9 178 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 SAT2Q96F10 170 aaPredicted RBP7.4□□□□□ -1.22
VPS28-204ENST00000526054 CLUHP3Q96NS8 147 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 C1QTNF4Q9BXJ3 329 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 ACTR3CQ9C0K3 210 aaPredicted RBP7.4□□□□□ -1.22
VPS28-204ENST00000526054 PRELID1Q9Y255 219 aa7.4□□□□□ -1.22
VPS28-204ENST00000526054 ZNF705EA8MWA4 302 aaPredicted RBP7.39□□□□□ -1.23
VPS28-204ENST00000526054 IGKV3-20P01619 116 aa7.39□□□□□ -1.23
VPS28-204ENST00000526054 HIST1H1AQ02539 215 aaPredicted RBP7.39□□□□□ -1.23
VPS28-204ENST00000526054 CLLU1Q5K131 121 aa7.39□□□□□ -1.23
VPS28-204ENST00000526054 OR8A1Q8NGG7 326 aa7.39□□□□□ -1.23
VPS28-204ENST00000526054 FAM213BQ8TBF2 198 aa7.39□□□□□ -1.23
VPS28-204ENST00000526054 MRPL53Q96EL3 112 aaKnown RBP7.39□□□□□ -1.23
VPS28-204ENST00000526054 CTXND1A0A1B0GTU2 59 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 NDUFB4O95168 129 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 STAG3L2P0CL84 134 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 STAG3L3P0CL85 134 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 ARL14EPLP0DKL9 152 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 CNN1P51911 297 aaKnown RBP7.38□□□□□ -1.23
VPS28-204ENST00000526054 BLOC1S1P78537 153 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 RPP25LQ8N5L8 163 aaKnown RBP7.38□□□□□ -1.23
VPS28-204ENST00000526054 OR10J6PQ8NGY7 276 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 PHLDA1Q8WV24 401 aaPredicted RBP7.38□□□□□ -1.23
VPS28-204ENST00000526054 RAB24Q969Q5 203 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 ZNF503Q96F45 646 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 PPP1R14DQ9NXH3 145 aa7.38□□□□□ -1.23
VPS28-204ENST00000526054 A8MTW9 85 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 ZNF705FA8MVS1 300 aaPredicted RBP7.37□□□□□ -1.23
VPS28-204ENST00000526054 TEX46H3BTG2 121 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 HMGB3O15347 200 aaKnown RBP7.37□□□□□ -1.23
VPS28-204ENST00000526054 EIF3GO75821 320 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS28-204ENST00000526054 CXorf1O96002 111 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 AMBPP02760 352 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 NMBP08949 121 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 ICAM4Q14773 271 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 LYPD1Q8N2G4 141 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 EXOC3-AS1Q8N2X6 119 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 PLA2G2EQ9NZK7 142 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 HERC2O95714 4834 aa7.37□□□□□ -1.23
VPS28-204ENST00000526054 M0R3E3 92 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 GIG44P09565 113 aaPredicted RBP7.36□□□□□ -1.23
VPS28-204ENST00000526054 H2AFB1P0C5Y9 115 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 ZNF705DP0CH99 300 aaPredicted RBP7.36□□□□□ -1.23
VPS28-204ENST00000526054 ZNF705BP0CI00 300 aaPredicted RBP7.36□□□□□ -1.23
VPS28-204ENST00000526054 GCHFRP30047 84 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 CSN1S1P47710 185 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms