RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 UBE2E2Q96LR5 201 aa6.41□□□□□ -1.38
RNF4-220ENST00000513578 GFRA4Q9GZZ7 299 aa6.41□□□□□ -1.38
RNF4-220ENST00000513578 RNASE7Q9H1E1 156 aaKnown RBP6.41□□□□□ -1.38
RNF4-220ENST00000513578 SERTAD4Q9NUC0 356 aa6.41□□□□□ -1.38
RNF4-220ENST00000513578 PPP1R14DQ9NXH3 145 aa6.41□□□□□ -1.38
RNF4-220ENST00000513578 NIPBLQ6KC79 2804 aaeCLIP6.41□□□□□ -1.38
RNF4-220ENST00000513578 HIVEP1P15822 2718 aa6.41□□□□□ -1.38
RNF4-220ENST00000513578 IGHV3-35A0A0C4DH35 117 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 IGHV7-4-1A0A0J9YVY3 117 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 IZUMO1RA6ND01 250 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 ZNF705GA8MUZ8 300 aaPredicted RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 M0R3E3 92 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 LGALS9O00182 355 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 CHEK1O14757 476 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BKO60814 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 APOHP02749 345 aaPredicted RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 MT-ND6P03923 174 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BJP06899 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 LGALS1P09382 135 aaKnown RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 TRGC1P0CF51 173 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BOP23527 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BBP33778 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BDP58876 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BCP62807 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST2H2BEQ16778 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 TMEM95Q3KNT9 176 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 FAM106AQ4KMX7 169 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 COA6Q5JTJ3 125 aaKnown RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 SAMD13Q5VXD3 122 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 LCN12Q6JVE5 192 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 REC114Q7Z4M0 266 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 ZFP82Q8N141 532 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 WIPF2Q8TF74 440 aaPredicted RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 TSKUQ8WUA8 353 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 FRZBQ92765 325 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BHQ93079 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BNQ99877 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 HIST1H2BMQ99879 126 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 GNB1LQ9BYB4 327 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 RPP21Q9H633 154 aaKnown RBP6.4□□□□□ -1.38
RNF4-220ENST00000513578 RPH3ALQ9UNE2 315 aa6.4□□□□□ -1.38
RNF4-220ENST00000513578 TRAV8-2A0A0B4J237 113 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 A8MWL6 223 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 A8MWP6 167 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 SMAD7O15105 426 aaKnown RBP6.39□□□□□ -1.39
RNF4-220ENST00000513578 IGHV3-11P01762 117 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 HOXA5P20719 270 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 BMI1P35226 326 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 FOXA3P55318 350 aaPredicted RBP6.39□□□□□ -1.39
RNF4-220ENST00000513578 SNRPEP62304 92 aaKnown RBP6.39□□□□□ -1.39
RNF4-220ENST00000513578 SRSF2Q01130 221 aaKnown RBP6.39□□□□□ -1.39
RNF4-220ENST00000513578 WDR73Q6P4I2 378 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 UNQ9165/PRO28630Q6UXU0 137 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 ATP5L2Q7Z4Y8 100 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 PRNTQ86SH4 94 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 NHLRC2Q8NBF2 726 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 SAV1Q9H4B6 383 aaPredicted RBP6.39□□□□□ -1.39
RNF4-220ENST00000513578 DAZ1Q9NQZ3 744 aaKnown RBP6.39□□□□□ -1.39
RNF4-220ENST00000513578 NAT8BQ9UHF3 227 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 SMPXQ9UHP9 88 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 UFC1Q9Y3C8 167 aa6.39□□□□□ -1.39
RNF4-220ENST00000513578 IGHV3OR16-8A0A075B7F1 116 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 TRAV8-1A0A0A6YYK1 113 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 SOCS3O14543 225 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 P01737 135 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 CDX1P47902 265 aaPredicted RBP6.38□□□□□ -1.39
RNF4-220ENST00000513578 LINC00322Q6ZN03 302 aaPredicted RBP6.38□□□□□ -1.39
RNF4-220ENST00000513578 C9orf47Q6ZRZ4 202 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 C8orf86Q6ZUL3 223 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 GBGT1Q8N5D6 347 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 DAZAP1Q96EP5 407 aaKnown RBP6.38□□□□□ -1.39
RNF4-220ENST00000513578 SGK494Q96LW2 274 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 PRR25Q96S07 402 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 YAE1D1Q9NRH1 226 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 TRAPPC1Q9Y5R8 145 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 ATRQ13535 2644 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 VPS13CQ709C8 3753 aa6.38□□□□□ -1.39
RNF4-220ENST00000513578 DNAJC9-AS1A6NH13 148 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 ZNF207O43670 478 aaKnown RBP6.37□□□□□ -1.39
RNF4-220ENST00000513578 RPLP1P05386 114 aaKnown RBP6.37□□□□□ -1.39
RNF4-220ENST00000513578 RNASE1P07998 156 aaKnown RBP6.37□□□□□ -1.39
RNF4-220ENST00000513578 CRIP1P50238 77 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 FABP9Q0Z7S8 132 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 PRR27Q6MZM9 219 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 LCNL1Q6ZST4 164 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 NUP35Q8NFH5 326 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 ZC2HC1AQ96GY0 325 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 RHPN1-AS1Q9BWJ2 59 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 C16orf95Q9H693 158 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 LENEPQ9Y5L5 61 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 ZANQ9Y493 2812 aa6.37□□□□□ -1.39
RNF4-220ENST00000513578 IGKV2-40A0A087WW87 121 aaPredicted RBP6.36□□□□□ -1.39
RNF4-220ENST00000513578 IGHV3-66A0A0C4DH42 116 aa6.36□□□□□ -1.39
RNF4-220ENST00000513578 TRBV7-9A0A0J9YWB2 115 aa6.36□□□□□ -1.39
RNF4-220ENST00000513578 A0A1B0GXF2 115 aa6.36□□□□□ -1.39
RNF4-220ENST00000513578 OVOL1O14753 267 aa6.36□□□□□ -1.39
RNF4-220ENST00000513578 IGKV2D-40P01614 121 aaPredicted RBP6.36□□□□□ -1.39
RNF4-220ENST00000513578 HLA-DQA1P01909 254 aa6.36□□□□□ -1.39
RNF4-220ENST00000513578 S100A8P05109 93 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms