RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 KIAA1107Q9UPP5 1409 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 TRAPPC8Q9Y2L5 1435 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 PFDN1O60925 122 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 SNRNP200O75643 2136 aaKnown RBP0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 FABP2P12104 132 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 MRPS36P82909 103 aaKnown RBP0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 MIR22HGQ0VDD5 57 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 DIAPH2-AS1Q14236 149 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 KRTAP5-10Q6L8G5 202 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 GLIPR1L1Q6UWM5 242 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 LINC00299Q6ZSB3 139 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 OR4B1Q8NGF8 309 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 OR4C12Q96R67 309 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 PCBD2Q9H0N5 130 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 HEATR1Q9H583 2144 aaKnown RBP0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 LRTM1Q9HBL6 345 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 NOTCH1P46531 2555 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 PIK3C2AO00443 1686 aa0.75□□□□□ -2.29
HMGB1P28-201ENST00000507778 MGAMO43451 1857 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 PLXNA4Q9HCM2 1894 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 LAMA4Q16363 1823 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 GABARAPH6UMI1 98 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 CD14P08571 375 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 NEFHP12036 1026 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 FABP4P15090 132 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 S100A5P33763 92 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 TMEM78Q5T7P6 136 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 STX12Q86Y82 276 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 EFCAB11Q9BUY7 163 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 ATPIF1Q9UII2 106 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 PHRF1Q9P1Y6 1649 aaKnown RBP0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 KIAA1549Q9HCM3 1950 aa0.74□□□□□ -2.29
HMGB1P28-201ENST00000507778 C5orf58C9J3I9 102 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 H7BYZ3 331 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 IGHV3-33P01772 117 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 BCL2P10415 239 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 ANGPTL5Q86XS5 388 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 LINC00269Q8N2A0 174 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 CCL4L1Q8NHW4 92 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 DIRC1Q969H9 104 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 CCDC32Q9BV29 185 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 TAF9BQ9HBM6 251 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 LAMTOR2Q9Y2Q5 125 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 CASP8AP2Q9UKL3 1982 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 CNTRLQ7Z7A1 2325 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 ALPK3Q96L96 1907 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 FBN2P35556 2912 aa0.73□□□□□ -2.29
HMGB1P28-201ENST00000507778 COL24A1Q17RW2 1714 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 S100A11P31949 105 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 SDC2P34741 201 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 ZCCHC23Q6ZST2 131 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 LIMD2Q9BT23 127 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 BOKQ9UMX3 212 aaPredicted RBP0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 V9GYQ6 96 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 DOCK4Q8N1I0 1966 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 GPR98Q8WXG9 6306 aa0.72□□□□□ -2.29
HMGB1P28-201ENST00000507778 TENM3Q9P273 2699 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 NDUFA6P56556 154 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 OCIAD2Q56VL3 154 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 CASC2Q6XLA1 102 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 KRTAP19-3Q7Z4W3 81 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 OR5H6Q8NGV6 325 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 OR5AK2Q8NH90 309 aa0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 ZNF469Q96JG9 3925 aaPredicted RBP0.71□□□□□ -2.3
HMGB1P28-201ENST00000507778 UNC13CQ8NB66 2214 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 TRBV30A0A0K0K1B3 111 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 A0A1B0GV72 72 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 A0A1W2PRE2 83 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 E7EQ34 232 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 TRACP01848 142 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 FABP1P07148 127 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 PRELID3AQ96N28 172 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 BCL9O00512 1426 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 UBR2Q8IWV8 1755 aa0.7□□□□□ -2.3
HMGB1P28-201ENST00000507778 NUP210LQ5VU65 1888 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 ADGBQ8N7X0 1667 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 A0A0J9YY99 117 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 FAM107AO95990 144 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 TPT1P13693 172 aaKnown RBP0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 FOXA3P55318 350 aaPredicted RBP0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 FXYD4P59646 89 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 MAXP61244 160 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 NEDD8Q15843 81 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 SPINK9Q5DT21 86 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 SPATA8Q6RVD6 105 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 CLEC2BQ92478 149 aa0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 ASCC3Q8N3C0 2202 aaKnown RBP0.69□□□□□ -2.3
HMGB1P28-201ENST00000507778 MYO18AQ92614 2054 aaKnown RBP0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 C3orf85A0A1B0GTC6 90 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 NUPR2A6NF83 97 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 ZNF727A8MUV8 499 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 K7EIL1 84 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 RPL37AP61513 92 aaKnown RBP0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 Q6ZQY7 126 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 LINC00305Q7Z4B0 112 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 GRPEL2Q8TAA5 225 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 CENPHQ9H3R5 247 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 SMPXQ9UHP9 88 aa0.68□□□□□ -2.3
HMGB1P28-201ENST00000507778 ZCCHC11Q5TAX3 1644 aaKnown RBP0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms