RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 GINS2Q9Y248 185 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 LAMTOR2Q9Y2Q5 125 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 RNF11Q9Y3C5 154 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 MED31Q9Y3C7 131 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 HSPB11Q9Y547 144 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 ASB4Q9Y574 426 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 KDM6BO15054 1643 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 MCM3APO60318 1980 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 VCANP13611 3396 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 VWFP04275 2813 aa0.73□□□□□ -2.29
TOPBP1-204ENST00000505804 BCL9O00512 1426 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 TNS3Q68CZ2 1445 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ZNF469Q96JG9 3925 aaPredicted RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ASH1LQ9NR48 2969 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 SCN3AQ9NY46 2000 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 RTL9Q8NET4 1388 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 SPTBN4Q9H254 2564 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 PTPRFP10586 1907 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 MYH1P12882 1939 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ALPK3Q96L96 1907 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 NBEAL2Q6ZNJ1 2754 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 CELSR3Q9NYQ7 3312 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 MGAMO43451 1857 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 KDM5CP41229 1560 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 TRBV6-8A0A0A6YYG3 113 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 IFNA4P05014 189 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 S100A11P31949 105 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 HBBP68871 147 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 EIF3IQ13347 325 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ALX1Q15699 326 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 HRCT1Q6UXD1 115 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ST6GALNAC3Q8NDV1 305 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 OR5D16Q8NGK9 328 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 OR9Q1Q8NGQ5 310 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 OR4K15Q8NH41 348 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 TMEM254Q8TBM7 123 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 SFT2D1Q8WV19 159 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 POP5Q969H6 163 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 LINC00526Q96FQ7 95 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ZNF714Q96N38 554 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 CCDC115Q96NT0 180 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 CACYBPQ9HB71 228 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 NAT8BQ9UHF3 227 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 KIAA1549LQ6ZVL6 1849 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 CFAP47Q6ZTR5 3102 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 RYR2Q92736 4967 aa0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 KMT2CQ8NEZ4 4911 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ANKHD1Q8IWZ3 2542 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ZFC3H1O60293 1989 aaKnown RBP0.72□□□□□ -2.29
TOPBP1-204ENST00000505804 ZNF292O60281 2723 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 DLC1Q96QB1 1528 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 KIAA1549Q9HCM3 1950 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 ARL5CA6NH57 179 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 B4DSR2 109 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 C17orf112F2Z3M2 114 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 J3KT08 172 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 KPNA4O00629 521 aaPredicted RBP0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 RER1O15258 196 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 DHFRP00374 187 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 IGLV1-51P01701 117 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 OR10J4P0C629 311 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 FABP2P12104 132 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 RPS3P23396 243 aaKnown RBP eCLIP0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 SDC2P34741 201 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 RAB5CP51148 216 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 C1orf137Q5JT78 98 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 C4orf22Q6V702 233 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 TMEM35BQ8NCS4 154 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 OR5D14Q8NGL3 314 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 OR2T35Q8NGX2 323 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 CHCHD1Q96BP2 118 aaKnown RBP0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 ZC2HC1AQ96GY0 325 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 TAF9BQ9HBM6 251 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 TRAPPC2LQ9UL33 140 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 LY96Q9Y6Y9 160 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 KDM6AO15550 1401 aaPredicted RBP0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 KIAA1107Q9UPP5 1409 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 REV3LO60673 3130 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 FANCMQ8IYD8 2048 aa0.71□□□□□ -2.3
TOPBP1-204ENST00000505804 EML5Q05BV3 1969 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 TANC2Q9HCD6 1990 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 PEAK1Q9H792 1746 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 PDE4DIPQ5VU43 2346 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 GCN1Q92616 2671 aaKnown RBP0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 A2MP01023 1474 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 IGHV1-58A0A0C4DH39 117 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 TRBV7-6A0A0J9YX20 115 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 LOC105371267A0A1B0GV96 52 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 TCRBV4S1A1TA0A5B7 111 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 E7EUB6 86 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 M0R233 179 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 MT-ND6P03923 174 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 SCGB1A1P11684 91 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 DSCR4P56555 118 aaPredicted RBP0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 NDUFA6P56556 154 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 CDK6Q00534 326 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 C1orf134Q5TEV5 83 aa0.7□□□□□ -2.3
TOPBP1-204ENST00000505804 TMEM14EPQ6UXP3 125 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms